Microscopy

Article Microscopy

Direct motif extraction from high resolution crystalline STEM images

Amel Shamseldeen Ali Alhassan, Siyuan Zhang, Benjamin Berkels

Summary: In this study, a novel method for automatic motif extraction in crystalline images based on a variational approach involving the unit cell projection operator is proposed and demonstrated. The method involves a multi-stage algorithm to determine the primitive unit cell and extract the motif image and atom positions. The method was tested on various synthetic and experimental images and proved to be effective.

ULTRAMICROSCOPY (2023)

Article Microscopy

Colleters in leaves of Mespilus germanica L. (Rosaceae): Micromorphology, histochemistry and fluorescence

T. Kh. Kumachova, A. V. Babosha, A. S. Ryabchenko, A. S. Voronkov

Summary: This study investigated the micromorphology, histochemistry, and fluorescence characteristics of colleters on leaf structures of Mespilus germanica L. Colleters were found on the tips of leaf blades and stipules, and less frequently on the petioles. They were multicellular secretory structures and their secretion process occurred during the active growth of leaf structures. Polysaccharides, phenolic substances, and lipids were detected in the colleters. The fluorescence spectrum showed a peak at 671-672 nm upon excitation at 405 and 473 nm.

MICRON (2023)

Article Microscopy

TEM-EDS microanalysis: Comparison among the standardless, Cliff & Lorimer and absorption correction quantification methods

Roberto Conconi, Gennaro Ventruti, Fernando Nieto, Giancarlo Capitani

Summary: This study compares quantification methods for energy dispersive X-ray microanalysis in transmission electron microscopy. The Cliff-Lorimer approximation and absorption correction method are found to provide better results compared to the standardless method. While CLA and ACM perform similarly when absorption can be considered negligible, ACM gives superior results for larger mass thickness. Caution is advised when deriving k-factors indirectly from minerals with different structures/chemistry, suggesting the need for separate k-factor data sets for accurate EDS quantification of major mineral classes. Element diffusion and channelling effects may complicate the analysis, especially in anisotropic minerals like phyllosilicates.

ULTRAMICROSCOPY (2023)

Article Microscopy

High pressure freezing and cryo-sectioning can be used for protein structure determination by electron diffraction

Christine Moriscot, Guy Schoehn, Dominique Housset

Summary: Electron diffraction is an efficient technique for solving the structure of small organic molecules and model proteins. However, the major challenge when applying this technique to protein samples is to prepare nano-crystals of the appropriate size and deposit them onto a grid with minimal solvent. In this study, a new approach using cryo-sectioning after high pressure freezing was presented, allowing the preservation of protein structures at high resolution and serving as a new sample preparation technique for 3D electron diffraction experiments.

ULTRAMICROSCOPY (2023)

Article Microscopy

Chemistry and microstructure of C-supported Ru catalyst nanoparticles: A correlative study

Nicolas A. Rivas Rivas, Alba Garzon Manjon, Miquel Vega-Paredes, Se-Ho Kim, Baptiste Gault, Hosun Jun, Chanwon Jung, Viktoriya Berova, Katharina Hengge, Tilman Jurzinsky, Christina Scheu

Summary: Ru@Pt core shell nanoparticles exhibit optimal catalytic properties for anodic oxidation of H2, leading to reduced Pt loading and improved stability in hydrogen fuel cells by preferential CO oxidation. However, the presence of residual Cl and Na in the Ru nanoparticles synthesized using RuCl3·H2O precursor has not been extensively studied. Therefore, the combination of correlative atom probe tomography (APT) and scanning transmission electron microscopy ((S)TEM) was employed to fully characterize the structure and chemical makeup of Ru nanoparticles due to the limitations of traditional characterization methods.

ULTRAMICROSCOPY (2023)

Article Microscopy

A dynamic parallel image acquisition method for slide scanning process

Bowen Zhong, Zhan Liao, Xiaopeng Hao, Junjie Hu, Lining Sun

Summary: This paper proposes a dynamic parallel image acquisition method to greatly improve the speed of image acquisition without compromising image clarity. It also designs a variable speed motion curve to ensure the quality of captured images. The experimental results demonstrate significant improvement in acquisition speed compared to traditional scanning mode.

MICRON (2023)

Article Microscopy

Reliable phase quantification in focused probe electron ptychography of thin materials

Christoph Hofer, Timothy J. Pennycook

Summary: Electron ptychography is an effective and sensitive technique for phase imaging. However, quantifying the ptychographic phases of atomic sites remains a challenge. This article presents a new method that overcomes this challenge, especially for 2D materials, and is robust to experimental parameters such as noise and sample tilt.

ULTRAMICROSCOPY (2023)

Article Microscopy

Protective effects of Urtica dioica on the cerebral cortex damage induced by Potassium bromate in adult male albino rats

Abeer A. Mahmoud, Maha Zayed Mohamed, Ebtehal Z. Hassen

Summary: Potassium bromate has degenerative effects on neurons in the cerebral cortex, while Urtica dioica provides neuroprotective effects through its antioxidant properties.

ULTRASTRUCTURAL PATHOLOGY (2023)

Article Anatomy & Morphology

Evaluation of biological potential of UV-spectrophotometric, SEM, FTIR, and EDS observed Punica granatum and Plectranthus rugosus extract-coated silver nanoparticles: A comparative study

Muhammad Faran Akhtar, Muhammad Irshad, Shaukat Ali, Muhammad Summer, Saima Gulrukh, Muhammad Irfan

Summary: Recent developments in the green synthesis of metallic nanoparticles using phytoconstituents have attracted global scientific attention. This study successfully synthesized silver nanoparticles using Punica granatum and Plectranthus rugosus plant extracts, and characterized their properties. The findings suggest that the synthesized silver nanoparticles under specific conditions have good potential for biomedical applications.

MICROSCOPY RESEARCH AND TECHNIQUE (2023)

Review Cell Biology

Allyl isothiocyanate regulates oxidative stress, inflammation, cell proliferation, cell cycle arrest, apoptosis, angiogenesis, invasion and metastasis via interaction with multiple cell signaling pathways

Thangarasu Rajakumar, Pachaiappan Pugalendhi

Summary: Cancer growth is a complex process involving genetic and epigenetic modifications. Chemoprevention, especially using naturally occurring phytochemicals like allyl isothiocyanate (AITC), has gained popularity due to its high bioavailability, safety, and efficacy. AITC has shown significant anticancer activity by selectively modulating various cell signaling pathways related to oxidative stress, inflammation, cell proliferation, apoptosis, angiogenesis, invasion, and metastasis.

HISTOCHEMISTRY AND CELL BIOLOGY (2023)

Article Anatomy & Morphology

Development of photoluminescent viscose fibers integrated with polymer containing lanthanide-doped phosphor

Yasmeen A. S. Hameed, Nasser A. Alamrani, Sahar Sallam, Saham F. Ibarhiam, Albandary Almahri, Ali Q. Alorabi, Nashwa M. El-Metwaly

Summary: Smart clothing refers to textiles that can sense external stimuli by changing their physical properties. In this study, a novel method was used to apply a luminous and hydrophobic composite coating onto cellulose-based materials. The LSAO-finished viscose showed efficient antimicrobial, UV-protective, and superhydrophobic activities, and exhibited reversible photochromism under UV light and in the dark.

MICROSCOPY RESEARCH AND TECHNIQUE (2023)

Letter Biology

Comment to a patient with SLC40A1-HC successfully treated using red blood cell apheresis

Yasuaki Tatsumi, Hisao Hayash, Koichi Kato

MEDICAL MOLECULAR MORPHOLOGY (2023)

Article Microscopy

Intracellular organelles remodeling in myocardial endotheliocytes in COVID-19: an autopsy-based study

Nataliya Bgatova, Sergey Savchenko, Alexei Lamanov, Iuliia Taskaeva, Boris Ayzikovich, Valentina Gritcinger, Andrey Letyagin, Maksim Korolev

Summary: This study examined the ultrastructural organization of endothelial cells in myocardial capillaries of COVID-19 patients. Electron microscopy revealed the presence of abundant rough endoplasmic reticulum, Golgi complex, and vesicles with virions and zippered endoplasmic reticulum in the endothelial cells. These findings suggest that COVID-19 can lead to remodeling of intracellular membranes and the formation of virus-induced structures critical for viral replication and assembly in myocardial endothelial cells. The data could provide insights into the development of endothelial dysfunction in COVID-19 patients and potential targets for drug therapy.

ULTRASTRUCTURAL PATHOLOGY (2023)

Article Microscopy

A perspective into full cost recovery within a core facility/shared resource lab

Peter J. O'Toole, Joanne L. Marrison

Summary: This article outlines the Bioscience Technology Facility (BTF) at the University of York as a prime example of the Full Cost Recovery model. It emphasizes that each facility operates differently and is subject to various regulations at different levels. The BTF model is able to fully recover its operating costs within an academic environment and has received institutional and funders support.

JOURNAL OF MICROSCOPY (2023)

Article Materials Science, Multidisciplinary

Unveiling Cellular Diversity in the Buffalo Corneal Stroma: Insights into Telocytes and Keratocytes Using Light Microscope, Transmission Electron Microscope, and Immunofluorescence Analysis

Ahmed M. Rashwan, Mohamed A. M. Alsafy, Samir A. A. El-Gendy, Ahmed A. El-Mansi, Samar M. Ez Elarab

Summary: This study investigated the expression and localization of telocytes and keratocytes in buffalo cornea using various microscopic techniques. The results suggest that telocytes and keratocytes play important roles in corneal wound healing, transparency maintenance, and homeostasis. The co-expression of certain markers indicates the potential presence of mesenchymal cells.

MICROSCOPY AND MICROANALYSIS (2023)

Article Materials Science, Multidisciplinary

Morphology of the Female and Male Reproductive Tracts and More Data on the Spermatostyle in the Brazilian Gyretes sp. (Coleoptera, Adephaga, Gyrinidae)

Karen Salazar, Ademaria Novais, Jose Lino-Neto, Jose Eduardo Serrao

Summary: We investigated the reproductive tracts of Gyretes sp. using light and transmission electron microscopies. The male has testes and accessory glands, while the female has ovaries, fertilization duct, and an accessory gland. These findings provide important information for understanding the reproductive biology and taxonomy of Gyretes.

MICROSCOPY AND MICROANALYSIS (2023)

Article Materials Science, Multidisciplinary

MATLAB-Based Algorithm and Software for Analysis of Wavy Collagen Fibers

Stanislav Polzer, Sarah Thompson, Swathi Vittalbabu, Arzu Ulu, David Carter, Tara Nordgren, Mona Eskandari

Summary: Knowledge of soft tissue fiber structure is necessary for accurate characterization and modeling of their mechanical response. This study develops an automatic algorithm to simultaneously estimate fiber global orientation, abundance, and waviness in an investigated image.

MICROSCOPY AND MICROANALYSIS (2023)

Article Anatomy & Morphology

Prehatching development of the adrenal gland in Japanese quail (Coturnix japonica): Histological, immunohistochemical, and electron microscopic studies

Saher Fadl, Abdelmohaimen M. M. Saleh, Ahmed Abou-Elmagd, Fatma M. Abdel-maksoud

Summary: The present study investigated the histological, ultrastructural, and immunohistochemical findings of the adrenal gland in Japanese quail during the prehatching phase. The results showed significant morphological changes in the adrenal gland during prenatal life. Studying the prenatal development of the adrenal gland in birds is important for advancing our understanding of this critical organ and its functions.

MICROSCOPY RESEARCH AND TECHNIQUE (2023)

Article Anatomy & Morphology

Single fiber curvature for muscle impairment assessment: Phase contrast imaging of stroke-induced animals

Subok Kim, Sanghun Jang, Onseok Lee

Summary: This study proposes a 3D assessment technique using synchrotron radiation x-ray microcomputed tomography to analyze the functionality and curvature damage of a single fiber in a stroke-induced muscle. The results show that the curvature damage in the impaired muscle progresses after the stroke, and the SF volume is significantly reduced. This study has important implications for the field of rehabilitation therapy.

MICROSCOPY RESEARCH AND TECHNIQUE (2023)

Article Anatomy & Morphology

Simultaneous visualization of micro-damage in cortical bone, trabecular bone, and intracortical vasculature for diagnosing osteoporosis: An animal model synchrotron imaging

Subok Kim, Sanghun Jang, Onseok Lee

Summary: This study aimed to objectively diagnose osteoporosis (OP) by visualizing micro-damage caused by OP using synchrotron radiation-based mu CT (SR-mu CT). The results showed that the OVX group had smaller cortical bone volume and thickness, as well as lower trabecular bone volume/total volume compared to the SHAM group. In addition, the SHAM group had larger canal volume and lacuna volume than the OVX group.

MICROSCOPY RESEARCH AND TECHNIQUE (2023)