Microscopy

Article Microscopy

On central focusing for contrast optimization in direct electron ptychography of thick samples

C. Gao, C. Hofer, T. J. Pennycook

Summary: Ptychography provides high dose efficiency images that can reveal light elements next to heavy atoms. However, contrast reversals can occur when the projected potential becomes strong. Recent research has shown that these reversals can be counteracted by adapting the focus. This study explains why the best contrast is often found with the probe focused to the middle of the sample and highlights the importance of convergence angle in thin samples to remove contrast reversals.

ULTRAMICROSCOPY (2024)

Article Microscopy

Prediction of primary knock-on damage during electron microscopy characterization of lithium-containing materials

Ali Jaberi, Nicolas Brodusch, Jun Song, Raynald Gauvin

Summary: This study investigates knock-on damage in lithium-ion batteries (LIBs) by computing threshold displacement energies (TDEs) and performing Monte Carlo simulation. The results indicate that Li is most sensitive to knock-on damage at moderate electron energies, and TDE is the principal parameter for assessing Li sensitivity to knock-on damage across similar structures.

ULTRAMICROSCOPY (2024)

Article Microscopy

Improving the temporal resolution of event-based electron detectors using neural network cluster analysis

Alexander Schroeder, Christopher Rathje, Leon van Velzen, Maurits Kelder, Sascha Schaefer

Summary: This study utilizes novel event-based electron detector platforms to extend the temporal resolution of electron microscopy. By training a neural network to predict electron arrival time, the researchers were able to improve the timing accuracy and achieve a promising solution for enhancing electron timing precision in various electron microscopy applications.

ULTRAMICROSCOPY (2024)

Article Microscopy

Effect of curcumin on malignant hepatocytes and mitochondria studied using atomic force microscopy

Shengli Zhang, Ying Wang, Bowei Wang, Yi Zeng, Jiani Li, Xingyue Wang, Cuihua Hu, Zhankun Weng, Zuobin Wang

Summary: Curcumin was found to have effects on the activity, migration, and mitochondrial membrane potential of malignant hepatocytes and their mitochondria. The findings from both optical microscopy and atomic force microscopy studies confirm these effects on cell morphology and biomechanics.

MICRON (2024)

Article Microscopy

Reconstruction of Angstrom resolution exit-waves by the application of drift-corrected phase-shifting off-axis electron holography

J. Lindner, U. Ross, T. Meyer, V. Boureau, M. Seibt, Ch. Jooss

Summary: Phase-shifting electron holography is an excellent method with high phase sensitivity to reveal electron wave phase information. An advanced drift correction scheme is proposed in this study, which exploits the interface of the TEM specimen and the vacuum area in the hologram. This method allows for obtaining reliable phase information.

ULTRAMICROSCOPY (2024)

Article Microscopy

Relation between sampling, sensitivity and precision in strain mapping using the Geometric Phase Analysis method in Scanning Transmission Electron Microscopy

A. Pofelski, Y. Zhu, G. A. Botton

Summary: The precision and sensitivity of the GPA method for strain characterization is a widely discussed topic. This study introduces the concept of phase noise and analyzes the parameter of sampling to improve the precision of GPA. Experimental and theoretical results demonstrate that using a larger pixel spacing in STEM can enhance the precision and sensitivity of the GPA method.

ULTRAMICROSCOPY (2024)

Article Microscopy

Spectromicroscopic study of the transformation with low energy ions of a hematite thin film into a magnetite/hematite epitaxial bilayer

Mauricio J. Prieto, Lucas de Souza Caldas, Liviu C. Tanase, Thomas Schmidt, Oscar Rodriguez de la Fuente

Summary: This study presents a synchrotron-based investigation of the synthesis process of a magnetite/hematite bilayer. Ion bombardment gradually transforms hematite into magnetite, and the growth of magnetite leads to the formation of stable boundaries. These findings are significant for understanding novel oxide heterostructures.

ULTRAMICROSCOPY (2024)

Article Microscopy

Real-time electron clustering in an event-driven hybrid pixel detector

J. Kuttruff, J. Holder, Y. Meng, P. Baum

Summary: In this study, a robust clustering algorithm is proposed that can find clusters in a continuous stream of raw data in real time. This algorithm converts pixel hits measured by hybrid pixel detectors to real single-electron events. By continuously comparing with previous hits, the algorithm efficiently identifies the merging of new and old events.

ULTRAMICROSCOPY (2024)

Article Microscopy

Mean inner potential of elemental crystals from density-functional theory calculations: Efficient computation and trends

Avi Auslender, Nivedita Pandey, Amit Kohn, Oswaldo Dieguez

Summary: This article describes a faster implementation based on DFT for computing the mean inner potential of crystals, providing quantum-mechanical calculations beyond the independent-atom approximation. The study also reveals the dependence of the mean inner potential on sample boundary conditions, mass density, and magnetic susceptibility, highlighting its correlation with various material properties.

ULTRAMICROSCOPY (2024)

Article Microscopy

Cellular evidence of communication strategies for small intestinal high endothelial cells: Ultrastructural insights of nano-scale exosomes and autophagy

Ping Hao, Wen Yin, Xi Chen, Shuangshuang Qin, Yue Yu, Yuan Yuan, Xiaoyu Quan, Bing Hu, Shouhai Chen, Yi Wu

Summary: This study confirmed the secretion of nano-scale exosomes-multivesicular bodies and the interaction of high endothelial cells (HECs) with lysosomes and mitochondria in the small intestine of laying birds. Immunohistochemistry and immunofluorescence results showed the strong immunoreactivity of exosome-related proteins and autophagic-related proteins in the lamina propria of the small intestine. These findings reveal an innovative communication method among HECs in the small intestine.

MICRON (2024)

Article Microscopy

Quantification of golgi dispersal and classification using machine learning models

Rutika Sansaria, Krishanu Dey Das, Alwin Poulose

Summary: This paper presents a method for quantifying Golgi dispersion images and classifying them using machine learning models. By applying automated image processing and segmentation, extracting features, and using different classifiers, accurate classification of Golgi images is achieved.

MICRON (2024)

Article Microscopy

Morphological and fractal features of cancer cells anchored on composite layers based on magnesium-doped hydroxyapatite loaded in chitosan matrix

Stefan Talu, Robert S. Matos, Henrique Duarte da Fonseca Filho, Daniela Predoi, Simona Liliana Iconaru, Carmen Steluta Ciobanu, Liliana Ghegoiu

Summary: This study developed composite layers based on magnesium-doped hydroxyapatite and chitosan, and demonstrated their good biocompatibility and antifungal effects against osteosarcoma cells. The attachment and growth of the cells on the composite layers were promoted, while the growth of Candida albicans was inhibited. The morphological analysis revealed complex 3D patterns on the cancer cell surfaces on the magnesium-containing composite layers.

MICRON (2024)

Article Microscopy

Dose symmetric electron diffraction tomography (DS-EDT): Implementation of a dose-symmetric tomography scheme in 3D electron diffraction

Emre Yoruk, Holger Klein, Stephanie Kodjikian

Summary: Beam sensitive nanomaterials pose challenges for crystallographic structure determination. A dose symmetric electron diffraction tomography (DS-EDT) method is developed to reduce beam damage and obtain complete data sets by merging individual datasets from multiple crystals.

ULTRAMICROSCOPY (2024)

Article Microscopy

Atom counting from a combination of two ADF STEM images

D. G. Senturk, C. P. Yu, A. De Backer, S. Van Aert

Summary: This article presents a statistics-based method for accurately counting the number of atoms in nanostructures, especially for images acquired with low electron doses and multiple element structures.

ULTRAMICROSCOPY (2024)

Article Microscopy

Self-supervised noise modeling and sparsity guided electron tomography volumetric image denoising

Zhidong Yang, Dawei Zang, Hongjia Li, Zhao Zhang, Fa Zhang, Renmin Han

Summary: In this work, we propose a self-supervised deep learning model for cryo-ET volumetric image denoising based on noise modeling and sparsity guidance. Experimental results demonstrate that our method can achieve reliable denoising by training on single noisy volume and outperform existing methods.

ULTRAMICROSCOPY (2024)

Article Microscopy

Morphology and ultrastructure of the colleterial glands in Myzinum flower wasps (Tiphiidae, Hymenoptera)

Marjorie da Silva, Cintia Eleonora Lopes Justino, Fernando Henrique Carnimeo, Fernando Barbosa Noll, Johan Billen

Summary: This article describes the secretory glands in females of two species of Myzinum and discusses their homology with other glands in the Hymenoptera order. The study finds that the three glands, instead of the commonly believed two, are present in Myzinum species. However, the limited research on the structure, function, and evolution of female accessory glands in Hymenoptera prevents conclusive statements.

MICRON (2024)

Article Microscopy

Importance of TEM sample thickness for measuring strain fields

Sangjun Kang, Di Wang, Christian Kuebel, Xiaoke Mu

Summary: Transmission electron microscopy is a valuable tool for assessing strain fields within materials. However, using thin specimens in TEM analysis can affect atomic configuration and deformation structure.

ULTRAMICROSCOPY (2024)

Article Anatomy & Morphology

Effects of Tulp4 deficiency on murine embryonic development and adult phenotype

Roland Jaeger, Stefan H. Geyer, Anoop Kavirayani, Mate G. Kiss, Elisabeth Waltenberger, Thomas Ruelicke, Christoph J. Binder, Wolfgang J. Weninger, Robert Kralovics

Summary: Genetically engineered mouse models have the potential to uncover basic biological processes and provide mechanistic insights into human disease pathogenesis. This study reveals the impact of TULP4 deficiency on embryonic development and the clinical characteristics of myeloproliferative neoplasms. It also suggests the potential role of TULP4 in organ system abnormalities and obesity-related phenotypes.

MICROSCOPY RESEARCH AND TECHNIQUE (2023)

Article Microscopy

Complete holography-based system for the identification of microparticles in water samples

Andouglas Goncalves da Silva Junior, Cosimo Distante, Luiz Marcos Garcia Goncalves

Summary: A comprehensive holography-based system is presented for detecting microparticles through microscopic holographic projections of water samples. It is designed for researchers engaged in microparticle research, particularly in water analysis, who may not be familiar with holographic technology. Additionally, the system can be used for environmental monitoring as a component of an autonomous sailboat robot. The paper provides a step-by-step guide for constructing the system and outlines its entire processing pipeline, including hologram acquisition for image reconstruction.

JOURNAL OF MICROSCOPY (2023)

Article Microscopy

Punctate IgG staining particles localize in the budding ballooning clusters of reactive foot processes in minimal change disease

Ping L. Zhang, Vasudevan D. Mahalingam, Brandon D. Metcalf, Yazan A. Al-Othman, Wei Li, Hassan D. Kanaan, Guillermo A. Herrera

Summary: This study found that the punctate IgG staining observed in cases of minimal change disease (MCD) is located on the budding ballooning clusters (BBC) of reactive foot processes in Bowman's space. Electron microscopy revealed the presence of BBC in all MCD cases, while only a small number of cases in the control group showed BBC. Immunogold labeling confirmed the presence of IgG particles in BBC of MCD.

ULTRASTRUCTURAL PATHOLOGY (2023)