Genetics & Heredity

Article Genetics & Heredity

Association of epistatic effects of MTHFR, ACE, APOB, and APOE gene polymorphisms with the risk of myocardial infarction and unstable angina in Egyptian patients

Mohamed Taha, Mohamed Moussa Mohamed Ibrahim, Heba Sedrak

Summary: This study examines the associations between gene-gene interactions and haplotypes and the risk of coronary artery disease. The findings suggest that gene-gene interactions may play a significant role in the risk of myocardial infarction and unstable angina.
Article Genetics & Heredity

Multilocus functional characterization of indigenous and exotic inbreds for dgat1-2, fatb, ge2 and wri1a genes affecting kernel oil and fatty acid profile in maize

Ashvinkumar Katral, Firoz Hossain, Rajkumar U. Zunjare, Rashmi Chhabra, T. Vinutha, Hriipulou Duo, Bhupender Kumar, Chikkappa G. Karjagi, Sherry R. Jacob, Sushil Pandey, Chirravuri N. Neeraja, Sujata Vasudev, Vignesh Muthusamy

Summary: This study characterized the genetic basis and protein-protein interaction network of kernel oil in maize by analyzing the functional polymorphism of genes such as dgat1-2, fatb, and wri1a in 292 maize inbreds. The results showed that these genes play important roles in oil content and composition in maize.
Article Genetics & Heredity

Genetic diversity and natural selection of apical membrane antigen-1 (ama-1) in Cameroonian Plasmodium falciparum isolates

Joseph Hawadak, Loick Pradel Kojom Foko, Rodrigue Roman Dongang Nana, Karmveer Yadav, Veena Pande, Aparup Das, Vineeta Singh

Summary: This study investigates the genetic diversity and natural selection of the Pfama-1 gene in Plasmodium falciparum isolates from Cameroon. The study finds a considerable nucleotide and haplotype diversity, as well as specific mutations in Cameroonian isolates. Positive diversifying selection and the identification of selected codon sites suggest the potential implication of these genetic variations in host immune pressure and parasite-binding complex modulation. The findings provide valuable baseline data for malaria vaccine design.
Article Genetics & Heredity

RNA-seq analysis reveals prenatal alcohol exposure is associated with placental inflammatory cells and gene expression

Randy P. Williams, Corina Lesseur, Haoxiang Cheng, Qian Li, Maya Deyssenroth, Christopher D. Molteno, Ernesta M. Meintjes, Sandra W. Jacobson, Joseph L. Jacobson, Helen Wainwright, Ke Hao, Jia Chen, R. Colin Carter

Summary: The study suggests that heavy alcohol exposure during pregnancy may impact the proportion of fetal placental villi macrophages and increase the expression of inflammatory genes. Further research is needed to explore these effects and evaluate the potential functional roles of placental inflammation in FASD.
Article Genetics & Heredity

Characterization and expression analysis of seven lipid metabolism-related genes in yellow catfish Pelteobagrus fulvidraco fed high fat and bile acid diet

Qing-Lin Li, Hua Zheng, Zhi Luo, Li-Xiang Wu, Peng-Cheng Xu, Jia-Cheng Guo, Yu-Feng Song, Xiao-Ying Tan

Summary: This study deciphered the full-length cDNA sequences of seven lipid metabolic genes in yellow catfish and investigated their expression and response to high-fat and bile acid diets. The results provide a foundation for further exploration into the function and regulatory mechanisms of these genes in fish.
Article Genetics & Heredity

An approach for searching genes in signaling pathways or gene-gene interaction networks related to Hypertension in the Mexican population

Anna Argoty-Pantoja, Rafael Velazquez-Cruz, Jorge Salmeron, Berenice Rivera-Paredez

Summary: This study proposes a systematic procedure for identifying SNP candidates for complex traits. By reviewing literature, analyzing signaling pathways and gene-gene interaction networks, SNPs with high frequency and multiple associations with signaling pathways were selected. Seven SNPs were genotyped in a cohort study, and a positive association with hypertension incidence was observed.
Article Genetics & Heredity

MSTRG3207 promotes apoptosis in zebrafish ZF4 cells via sponging dre-miR-736/bbc3/LOC101885512 axis during cold acclimation

Zhongqiu Zhu, Qianting Yang, Xiaoying Tian, Da Man, Jian Wang, Junfang Zhang, Bingshe Han

Summary: This study constructed a ceRNA network mediated by lncRNAs in cold-acclimated zebrafish ZF4 cells and revealed that upregulation of MSTRG3207 promotes apoptosis by sponging dre-miR-736 during cold acclimation.
Article Genetics & Heredity

Cloning and functional characterization of the oxidative squalene cyclase gene in the deep-sea holothurian Chiridota sp.

Yanan Huang, Helu Liu, Yang Zhou, Zaiqing Lu, Yujin Pu, Haibin Zhang

Summary: In this study, an Oxidative squalene cyclase (OSC) gene derived from the deep-sea holothurian Chiridota sp. was cloned and functionally characterized. The Chiridota sp. OSC was found to catalyze 2,3-Oxidosqualene into parkeol and exhibited higher relative enzymatic activity and stability under high pressure compared to a shallow-sea holothurian.
Article Genetics & Heredity

Comparison of secreted miRNAs and proteins during proliferation and differentiation of bovine satellite cells in culture implies potential roles in regulating myogenesis

Soren Drud-Heydary Nielsen, Navid Sahebekhtiari, Ziyu Huang, Jette Feveile Young, Martin Kroyer Rasmussen

Summary: This study analyzed the secretion of miRNAs and proteins during the proliferation and differentiation of satellite cells in vitro, revealing differential secretion of these molecules. The findings suggest that the secreted molecules may play a role in the regulation of muscle development pathways.
Article Genetics & Heredity

Expression of miR-22 profiling in colorectal normal-adenoma-carcinoma sequence

Gairui Li, Dan Zhao, Xiaolin Peng, Yashuang Zhao

Summary: MiRNA-22 shows potential as a candidate for early diagnosis of colorectal cancer (CRC). The study found higher miR-22 expression levels in the CRC and CRA groups, suggesting its potential as a biomarker for CRC early screening.
Article Genetics & Heredity

GhTPPA_2 enhancement of tobacco sugar accumulation and drought tolerance

Yunxiao Wei, Yuhan Song, Muhammad Aamir Khan, Chengzhen Liang, Zhigang Meng, Yuan Wang, Sandui Guo, Rui Zhang

Summary: This study analyzed the GhTPP protein family in upland cotton for the first time and identified the important role of GhTPPA_2 in regulating sugar metabolism, improving soluble sugar accumulation, and drought stress tolerance.
Article Genetics & Heredity

Identification of a potential signature to predict the risk of postmenopausal osteoporosis

Yannan Geng, Rui Shao, Tiantong Xu, Lilong Zhang

Summary: A novel risk model based on SCUBE3, TNNC1, SPON1, SEPT12 and ULBP1 genes was developed for predicting PMOP risk, with higher risk score indicating higher risk of suffering from PMOP. Significant differences in signaling pathway activities were observed between the high-risk score group and the low-risk score group.
Article Genetics & Heredity

LUCAT1 inhibits ferroptosis in bladder cancer by regulating the mRNA stability of STAT3

Yuepeng Cao, Zhuo Zou, Xuhong Wu, Weijian Li, Zhen Lu, Jiawei Hu, Liu Yang

Summary: This study reveals the role of LUCAT1 in bladder cancer (BC) and its impact on ferroptosis. LUCAT1 acts as a regulator in BC, promoting cell proliferation, migration, and invasion while inhibiting ferroptosis. Mechanistically, LUCAT1 binds to IGF2BP1, which governs STAT3 mRNA stability.
Article Genetics & Heredity

A potential role of human esophageal cancer-related gene-4 in cardiovascular homeostasis

Chaoying Wang, Jianghui He, Chunyue Chen, Wenjun Luo, Xitong Dang, Liang Mao

Summary: Human esophageal cancer related gene-4 (ECRG-4) plays a role as a tumor suppressor and also maintains homeostasis in the cardiovascular system. It is covalently bound to the cell surface, signaling the maintenance of homeostasis, and activates inflammatory and tissue proliferative responses upon tissue injury. ECRG-4 is highly expressed in the heart and vasculature, involved in cardiac rate/rhythm control, cardiotoxicity, and cardiovascular diseases. Therefore, ECRG-4 has the potential to be a novel therapeutic target for maintaining cardiovascular system homeostasis.
Article Genetics & Heredity

Comparative alternative polyadenylation profiles in differentiated adipocytes of subcutaneous and intramuscular fat tissue in cattle

Xiangge Meng, Chengping Li, Yu Hei, Xiang Zhou, Guoli Zhou

Summary: The study used IVT-SAPAS sequencing to analyze the dynamic changes of APA sites during adipogenesis in bovine subcutaneous preadipocytes and intramuscular preadipocytes. The results showed that APA plays an important role in adipocyte differentiation, and UTR-APA switching genes have different trends, with intramuscular preadipocytes tending to use shorter 3'UTR for differentiation. TRIB3, WWTR1, and INSIG1 play important roles in intramuscular preadipocyte differentiation.
Article Ecology

The shirker's dilemma and the prospect of cooperation in large groups

Jorge Pena, Aviad Heifetz, Georg Noldeke

Summary: Cooperation usually becomes harder to sustain as groups become larger, but in some cases, increasing group size can increase the probability of cooperation. The expected payoff and the probability of provision of the public good vary with the cost of cooperation.

THEORETICAL POPULATION BIOLOGY (2024)

Article Genetics & Heredity

Genome-wide regulation of Pol II, FACT, and Spt6 occupancies by RSC in Saccharomyces cerevisiae

Emily Biernat, Mansi Verma, Chhabi K. Govind

Summary: RSC is an essential ATP-dependent chromatin remodeling complex in Saccharomyces cerevisiae. It regulates nucleosome-depleted regions (NDRs) by sliding flanking nucleosomes away from NDRs. Depletion of RSC leads to nucleosome encroachment in NDRs and transcription initiation defects. The study compared the effects of catalytic-dead Sth1 and rapid depletion of Sth1 on transcription. Rapid depletion of Sth1 reduces recruitment of TBP and Pol II, while the catalytic-dead mutant exhibits a severe reduction in TBP binding but accumulates Pol II in coding regions. The results suggest a role for RSC in transcription elongation and termination processes.
Article Genetics & Heredity

Contribution of genetic factors towards cefotaxime and ciprofloxacin resistance development among Extended spectrum beta-lactamase producing-Quinolone resistant pathogenic Enterobacteriaceae

Lena Dhara, Anusri Tripathi

Summary: This study explores the contribution of beta-lactamase/quinolone resistant genes and other factors to the development of ESBL and quinolone resistant pathogenic bacteria. It reveals that the presence of these resistance genes, efflux pump upregulation, and porin loss/reduction contribute to the development of antibiotic resistance. Overall, the study provides important insights into the mechanisms behind the emergence of these resistant bacteria. Rating: 8/10
Article Genetics & Heredity

Association between expression levels of p53, miRNA-21, and lncRNA-TCL6 and the risk of preeclampsia in pregnant women

Mona Ahmed Abbas, Heba Maged Abo Shady, Ola Hamdy Ahmed Elshafey, Nevein M. Al-Sheikh

Summary: This study evaluated the association between the expression levels of p53, miRNA-21, and lncRNA-TCL6 and the risk and severity of preeclampsia in pregnant women. The results showed that these genes were dysregulated in preeclampsia compared to normal pregnancy, highlighting the role of apoptosis in its development. P53 was identified as a prognostic marker for preeclampsia, distinguishing between mild and severe cases.