Biophysics

Article Biophysics

Biomaterials coated with zwitterionic polymer brush demonstrated significant resistance to bacterial adhesion and biofilm formation in comparison to brush coatings incorporated with antibiotics

Maryam Hassani, Mojtaba Kamankesh, Mazda Rad-Malekshahi, Kobra Rostamizadeh, Farhad Rezaee, Ismaeil Haririan, Seyed Mojtaba Daghighi

Summary: Bacterial adhesion and biofilm formation on the surface of biomaterial implants is a critical problem, and a polymer brush coating with antiadhesive and antimicrobial properties has proven to be highly effective in resolving this issue.

COLLOIDS AND SURFACES B-BIOINTERFACES (2024)

Article Biochemistry & Molecular Biology

Engraulisin: A novel marine derived cell penetrating peptide with activity against drug resistant bacteria

Saurabh Saraswat, Archana Chugh

Summary: Cell penetrating peptides (CPP) are important tools for intracellular delivery of molecules. In this study, a novel marine-derived CPP from Engraulis japonicus, called Engraulisin, was reported. Engraulisin demonstrated successful cellular uptake and selective antimicrobial activity against Methicillin-resistant Staphylococcus aureus (MRSA), making it a potential candidate for drug delivery.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2024)

Article Biochemistry & Molecular Biology

Polypyrrole-based structures for activation of cellular functions under electrical stimulation

Ilona Uzieliene, Anton Popov, Raminta Vaiciuleviciute, Gailute Kirdaite, Eiva Bernotiene, Almira Ramanaviciene

Summary: This review discusses the application of polypyrrole (Ppy), an electroconductive polymer, in cell culture experiments with electrical stimulation (ES) and its potential for tissue regeneration. Ppy can direct ES to cells and stimulate differentiation towards different cell lineages. Different types of Ppy materials and their combination with active molecules are explored.

BIOELECTROCHEMISTRY (2024)

Article Biochemistry & Molecular Biology

Tetrahedral DNA nanostructure enhanced toehold-mediated strand displacement for highly sensitive electrochemiluminescence assay of CA125

Weiwei Zhang, Wenwen Wang, Yueyue Yu

Summary: A multi-amplified electro-chemiluminescence aptasensor was developed for efficient recognition of the tumor marker CA125 in ovarian cancer. The sensor utilizes a tetrahedral DNA nanostructure and gold nanoparticles/Ru(bpy)32+/metal-organic framework signal probe for enhanced detection. The aptasensor shows high sensitivity and reliability, making it suitable for clinical analysis of CA125 detection.

BIOELECTROCHEMISTRY (2024)

Article Biochemistry & Molecular Biology

Electrochemical techniques for label-free and early detection of growing microbial cells and biofilms

Joelle Saulnier, Catherine Jose, Florence Lagarde

Summary: This review provides an overview of the currently available electrochemical techniques, particularly impedimetric and voltamperometric methods, highlighting their recent advances in antibiotic susceptibility testing and microbial biofilm monitoring.

BIOELECTROCHEMISTRY (2024)

Review Biochemistry & Molecular Biology

The mitochondrial signature of cultured endothelial cells in sepsis: Identifying potential targets for treatment

Alba Montero-Jodra, Miguel Angel de la Fuente, Dino Gobelli, Marta Martin-Fernandez, Jesus Villar, Eduardo Tamayo, Maria Simarro

Summary: Sepsis is the leading cause of infection-related death worldwide, and there is currently no specific treatment available. This review provides an overview of the important role of endothelial cell activation and dysfunction in sepsis development, as well as the involvement of mitochondria as potential targets in experimental models.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2024)

Article Biochemistry & Molecular Biology

Proximity hybridization induced bipedal DNA walker and rolling circle amplification for label-free electrochemical detection of apolipoprotein A4

Chenyi Zhuo, Dehong Yu, Jiuying Cui, Zichun Song, Qianli Tang, Xianjiu Liao, Zhao Liu, Ning Xin, Lu Lou, Fenglei Gao

Summary: A label-free detection strategy for quantification of Apolipoprotein A4 (Apo-A4) has been developed based on rolling circle amplification (RCA) and proximity hybridization-induced DNAzyme-driven bipedal DNA walker. This method shows high sensitivity and selectivity for a wide range of protein targets.

BIOELECTROCHEMISTRY (2024)

Article Biochemistry & Molecular Biology

Self-cleaning paper-based microfluidic biosensor employing DNAzyme and semiconducting single-walled carbon nanotube for copper ion detection

Xiaopeng Hou, Qiongyi Cheng, Hui Wang

Summary: A self-cleaning paper-based microfluidic biosensor was developed using hydrophobic paper decorated with polymeric octadecyl trichlorosilane. The biosensor showed improved performance and could effectively measure the concentration of copper ions in livestock feed and manure.

BIOELECTROCHEMISTRY (2024)

Article Biochemistry & Molecular Biology

Impaired digestive function of sucrase-isomaltase in a complex with the Greenlandic sucrase-isomaltase variant

Stephanie Tannous, Hassan Y. Naim

Summary: Congenital sucrase-isomaltase deficiency (CSID) is an autosomal recessive disorder caused by variants in the SI gene. A frameshift mutation called c.273_274delAG (p.Gly92Leufs*8) has been identified in CSID patients in Greenlandic population, which leads to loss of digestive function of SI. Surprisingly, the truncated mutant can still be located on the cell surface and interacts with wild type SI, negatively affecting its enzymatic function. Furthermore, heterozygote carriers of this mutation may also exhibit CSID symptoms.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2024)

Article Biochemistry & Molecular Biology

Spontaneous transfer of small peripheral peptides between supported lipid bilayer and giant unilamellar vesicles

Emanuela Efodili, Ashlynn Knight, Maryem Mirza, Cedric Briones, Il-Hyung Lee

Summary: This study demonstrates the spontaneous transfer of small membrane-bound peptides between a supported lipid bilayer and giant unilamellar vesicles in vitro. The transfer occurs through the formation of hemi-fusion stalks and is limited to small peptides due to the highly curved structure of the stalk. This system provides a synthetic platform for studying peptide trafficking between synthetic membranes.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2024)

Review Biochemistry & Molecular Biology

A mitochondrial nexus in major depressive disorder: Integration with the psycho-immune-neuroendocrine network

M. T. Ciubuc-Batcu, N. J. C. Stapelberg, J. P. Headrick, G. M. C. Renshaw

Summary: The nervous system relies on mitochondria, and impaired mitochondrial function is associated with major depressive disorder. Modulating mitochondrial function may be a therapeutic target for treating MDD.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2024)

Article Biochemistry & Molecular Biology

Dynamic chromatin accessibility landscapes of osteoblast differentiation and mineralization

Yueqi Chen, Jiulin Tan, Chuan Yang, Zhiguo Ling, Jianzhong Xu, Dong Sun, Fei Luo

Summary: Bone is a self-healing organ that undergoes continuous regeneration through the cooperation of osteoclasts and osteoblasts. This study used ATAC-seq and RNA-Seq techniques to investigate the chromatin accessibility and transcriptomic landscape of osteoblast differentiation and mineralization. The results showed that global chromatin accessibility was extensively improved during osteoblastogenesis. Additionally, several transcription factors including MEF2A, PRRX1, Shox2, and HOXB13 were found to modulate the promoter accessibility of target genes during osteoblast differentiation.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2024)

Article Biochemistry & Molecular Biology

Alleviation of experimental autoimmune encephalomyelitis by transferring low RelB expression tolerogenic dendritic cells

Chao Zheng, Lingling Liu, Caiyun Liu, Fengna Chu, Yue Lang, Shan Liu, Yan Mi, Jie Zhu, Tao Jin

Summary: Inducing tolerogenic dendritic cells (tDCs) with low RelB expression could effectively alleviate symptoms and reduce immune cell infiltration and demyelination in experimental autoimmune encephalomyelitis (EAE) mouse model.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2024)

Article Biochemistry & Molecular Biology

Time evolution of electrical impedance spectra of Staphylococcus aureus and Escherichia coli bacteria

David Alejandro Miranda Mercado, Erika Viviana Godoy Alarcon, Ely Dannier V-Nino

Summary: This research work investigates the time evolution of electrical properties of gram-positive and gram-negative bacteria in the presence of methyl violet and Lugol. The results show that the impedance magnitude decreases with an increasing bacterial population for both strains, but the rate of impedance magnitude variation over time is different between gram-positive and gram-negative bacteria. These findings suggest that the time evolution of electrical impedance spectra can be used to differentiate Staphylococcus aureus from Escherichia coli bacteria.

BIOELECTROCHEMISTRY (2024)

Article Biochemistry & Molecular Biology

A voltammetric study of nitrogenase MoFe-protein using low-potential electron transfer mediators

Artavazd Badalyan, Zhi-Yong Yang, Lance C. Seefeldt

Summary: The molybdenum-iron protein (MoFeP) is a component of the enzyme nitrogenase and can catalyze the reduction of various small molecules. However, it has been found that increasing the driving force alone cannot achieve efficient electrochemical activation of MoFeP.

BIOELECTROCHEMISTRY (2024)

Article Biochemistry & Molecular Biology

Intraoperative electrochemotherapy of the posterior resection surface after pancreaticoduodenectomy: Preliminary results of a hybrid approach treatment of pancreatic cancer

Zan Cebron, Mihajlo Djokic, Miha Petric, Maja Cemazar, Masa Bosnjak, Gregor Sersa, Blaz Trotovsek

Summary: This study presents a novel treatment approach for pancreatic cancer combining surgical resection and intraoperative electrochemotherapy. Preliminary results suggest that this hybrid approach is safe and feasible.

BIOELECTROCHEMISTRY (2024)

Article Biochemistry & Molecular Biology

Novel electrochemical biosensor for breast cancer detection, based on a nanocomposite of carbon nanofiber, metal-organic framework, and magnetic graphene oxide

Emadoddin Amin Sadrabadi, Ali Benvidi, Mostafa Azimzadeh, Leila Asgharnejad, Amin Shiralizadeh Dezfuli, Patricia Khashayar

Summary: In this study, a novel microRNA biosensor based on magnetic rod carbon paste electrodes was developed for breast cancer detection using a relatively new MOF structure as a substrate. The biosensor showed a very low detection limit and a wide dynamic range, indicating its potential for clinical diagnostics.

BIOELECTROCHEMISTRY (2024)

Article Biochemistry & Molecular Biology

Humanin ameliorates TBI-related cognitive impairment by attenuating mitochondrial dysfunction and inflammation

Pavan Thapak, Zhe Ying, Victoria Palafox-Sanchez, Guanglin Zhang, Xia Yang, Fernando Gomez-Pinilla

Summary: Traumatic brain injury (TBI) impairs cellular energy demand, compromising neuronal function and plasticity. This study demonstrates that the mitochondrial activator humanin (HN) can counteract the reduction in mitochondrial bioenergetics caused by TBI, restore memory function and synaptic protein levels, and suppress inflammation and astrocyte proliferation. HN plays an integral role in normalizing fundamental aspects of TBI pathology.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2024)

Review Biochemistry & Molecular Biology

Reactive oxygen species in colorectal cancer adjuvant therapies

Yang Zhang, Mengqiu Hao, Xuyang Yang, Su Zhang, Junhong Han, Ziqiang Wang, Hai-Ning Chen

Summary: Colorectal cancer often requires adjuvant therapies to reduce tumor burden, and the efficacy of these therapies is significantly influenced by reactive oxygen species (ROS). ROS-mediated colorectal cancer adjuvant therapies involve multiple mechanisms, and preliminary clinical trials have shown the potential of ROS-manipulating therapy in enhancing treatment outcomes.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2024)

Article Biochemistry & Molecular Biology

Small extracellular vesicles-mediated cellular interactions between tumor cells and tumor-associated macrophages: Implication for immunotherapy

Liaoran Niu, Qi Wang, Fan Feng, Wanli Yang, Zhenyu Xie, Gaozan Zheng, Wei Zhou, Lili Duan, Kunli Du, Yiding Li, Ye Tian, Junfeng Chen, Qibin Xie, Aqiang Fan, Hanjun Dan, Jinqiang Liu, Daiming Fan, Liu Hong, Jian Zhang, Jianyong Zheng

Summary: This review provides a comprehensive summary of the interaction between cancer cells and macrophages in the tumor microenvironment, and discusses the role of small extracellular vesicles (sEVs) in this process. It also explores the various effects of macrophage-secreted sEVs on tumor malignant transformation, and addresses the therapeutic advancements and challenges associated with these vesicles.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2024)