Biophysics

Article Biochemistry & Molecular Biology

Novel inhibitors with sulfamethazine backbone: synthesis and biological study of multi-target cholinesterases and α-glucosidase inhibitors

Cuneyt Turkes, Suleyman Akocak, Mesut Isik, Nebih Lolak, Parham Taslimi, Mustafa Durgun, Ilhami Gulcin, Yakup Budak, Sukru Beydemir

Summary: A series of novel ureido-substituted derivatives with sulfamethazine backbone were investigated for the inhibition of AChE, BChE, and alpha-GLY. Among these derivatives, compound 2c showed the most potent inhibition profile towards AChE and BChE. The study suggests the potential use of inhibitors with sulfamethazine backbone as innovative anticholinergic and antidiabetic agents.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2022)

Article Biophysics

Fully integrated flexible biosensor for wearable continuous glucose monitoring

Xiaofeng Jin, Guanhua Li, Tailin Xu, Lei Su, Dan Yan, Xueji Zhang

Summary: Continuous glucose monitoring platform with optimized linear range and long-term stability was developed using a biocompatible conjugated polymer. The system included a small design with signal conditioning, programmable electrochemical chip, and wireless connection. Biocompatibility tests and animal experiments confirmed successful in vivo blood glucose monitoring.

BIOSENSORS & BIOELECTRONICS (2022)

Review Biochemistry & Molecular Biology

Nutrients in prevention, treatment, and management of viral infections; special focus on Coronavirus

Fatemeh BourBour, Samaneh Mirzaei Dahka, Maryam Gholamalizadeh, Mohammad Esmail Akbari, Mahdi Shadnoush, Mohammad Haghighi, Hamidreza Taghvaye-Masoumi, Narjes Ashoori, Saied Doaei

Summary: This paper systematically reviews the impact of nutrients on the immune system and their potential role in the prevention, treatment, and management of COVID-19 in adults. The findings suggest that certain nutrients play an active role in enhancing the functioning of the immune system against viral infections, and supplementation with these nutrients may improve the health status of patients with viral infections.

ARCHIVES OF PHYSIOLOGY AND BIOCHEMISTRY (2023)

Article Biophysics

SERS-based CRISPR/Cas assay on microfluidic paper analytical devices for supersensitive detection of pathogenic bacteria in foods

Jianwen Zhuang, Zhiying Zhao, Kai Lian, Lijuan Yin, Jiajing Wang, Shuli Man, Guozhen Liu, Long Ma

Summary: In this study, a RPA-Cas12a-mu PAD was designed using CRISPR/Cas12a and SERS technology for highly sensitive bacterial detection. The concentration of S.typhi was determined by the aggregation level of SERS nanoprobes, enabling fast and accurate testing of food samples.

BIOSENSORS & BIOELECTRONICS (2022)

Article Biochemistry & Molecular Biology

Molecular basis of the potential interaction of SARS-CoV-2 spike protein to CD147 in COVID-19 associated-lymphopenia

Mohamed A. Helal, Shaimaa Shouman, Ahmad Abdelwaly, Ahmed O. Elmehrath, Mohamed Essawy, Shireen M. Sayed, Amr H. Saleh, Nagwa El-Badri

Summary: Lymphopenia is a characteristic feature of COVID-19, possibly due to the entry of SARS-CoV-2 into T cells through the CD147 receptor. Research shows that the viral spike protein binds to CD147 via electrostatic interactions, providing insights for potential treatment strategies against the virus.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2022)

Article Biophysics

Advances in surface plasmon resonance-based biosensor technologies for cancer biomarker detection

Abdelmonaim Azzouz, Lamia Hejji, Ki-Hyun Kim, Deepak Kukkar, Badredine Souhail, Neha Bhardwaj, Richard J. C. Brown, Wei Zhang

Summary: Surface plasmon resonance (SPR) technology is a valuable tool for the detection of cancer biomarkers, offering advantages such as low cost fabrication, sensitivity, label-free detection, and accuracy. Recent research has focused on utilizing SPR biosensing technology for diagnosing various cancer types, evaluating the performance of SPR biosensors in terms of quality assurance criteria. The limitations and future challenges associated with SPR biosensors for cancer biomarker detection are also discussed.

BIOSENSORS & BIOELECTRONICS (2022)

Article Biophysics

Graphene-enabled wearable sensors for healthcare monitoring

Huiqing Zhang, Rongyan He, Yan Niu, Fei Han, Jing Li, Xiongwen Zhang, Feng Xu

Summary: This paper reviews the recent advances in the development and modification of graphene-based materials for fabricating advanced wearable sensors, summarizing the design guidelines, sensing mechanisms, applications and evolution. The challenges and future prospects in this field are also discussed.

BIOSENSORS & BIOELECTRONICS (2022)

Article Biophysics

CRISPR/Cas-powered nanobiosensors for diagnostics

Quynh Anh Phan, Linh B. Truong, David Medina-Cruz, Can Dincer, Ebrahim Mostafavi

Summary: CRISPR-Dx offers broad enhancements compared to traditional nanobiosensors by utilizing the trans-cleavage activity of the CRISPR/Cas systems. However, the current singlestranded DNA/RNA reporters of CRISPR-Dx have poor stability and limited sensitivity. Research is shifting towards using the trans-cleavage activity of CRISPR/Cas effectors on metal nanoparticles to develop novel nanobiosensors with high accuracy, sensitivity, selectivity, and versatility.

BIOSENSORS & BIOELECTRONICS (2022)

Article Biophysics

Metal-organic frameworks based hybrid nanocomposites as state-of-the-art analytical tools for electrochemical sensing applications

Tahir Rasheed, Komal Rizwan

Summary: This paper systematically summarizes recent breakthroughs in MOFs and their derivatives in enhanced electrochemical sensing applications. The overview part provides insights into the future prospects and directions of MOFs and their derivatives, aiming to overcome present limitations.

BIOSENSORS & BIOELECTRONICS (2022)

Article Biophysics

Frontier and hot topics in electrochemiluminescence sensing technology based on CiteSpace bibliometric analysis

Xiancheng Liu, Shuang Zhao, Lili Tan, Yu Tan, Yi Wang, Zhiyi Ye, Changjun Hou, Yan Xu, Shan Liu, Guixue Wang

Summary: This review article provides a comprehensive retrospective analysis of the development, research hotspots, and future trends of electrochemiluminescence (ECL) technology in the past 20 years through quantitative analysis and visual review. It also includes a detailed review and analysis of selected highly cited articles. The article particularly emphasizes the development needs of ECL technology in terms of improving sensor performance, developing materials with excellent ECL performance, innovating and cooperating with other devices, and developing high-speed and high-throughput sensors.

BIOSENSORS & BIOELECTRONICS (2022)

Article Biophysics

Simultaneous detection of dual biomarkers using hierarchical MoS2 nanostructuring and nano-signal amplification-based electrochemical aptasensor toward accurate diagnosis of prostate cancer

Ruohong Yan, Na Lu, Suping Han, Zhanglu Lu, Yang Xiao, Zhihang Zhao, Min Zhang

Summary: The study introduces an electrochemical aptasensor using MoS2 nanostructuring and SiO2 nano-signal amplification for simultaneous detection of PSA and sarcosine in prostate cancer. This approach allows for ultrasensitive detection, differentiation of cancer patients from healthy individuals, and provides a single-step analysis for accurate diagnosis and early detection of cancer in clinical settings.

BIOSENSORS & BIOELECTRONICS (2022)

Article Biochemistry & Molecular Biology

Prevention of SARS-CoV-2 cell entry: insight from in silico interaction of drug-like alkaloids with spike glycoprotein, human ACE2, and TMPRSS2

Gideon A. Gyebi, Adegbenro P. Adegunloye, Ibrahim M. Ibrahim, Oludare M. Ogunyemi, Saheed O. Afolabi, Olalekan B. Ogunro

Summary: In silico studies were conducted to evaluate 97 alkaloids from African medicinal plants for their interactions with SARS-CoV-2 related proteins. Results showed that more than 15 alkaloids exhibited strong interactions with these proteins, suggesting their potential in altering the virus's ability to enter host cells. Further experimental evaluations are proposed.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2022)

Article Biophysics

Towards hospital-on-chip supported by 2D MXenes-based 5th generation intelligent biosensors

Vishal Chaudhary, Virat Khanna, Hafiz Taimoor Ahmed Awan, Kamaljit Singh, Mohammad Khalid, Yogendra Kumar Mishra, Shekhar Bhansali, Chen-Zhong Li, Ajeet Kaushik

Summary: This article introduces the fifth-generation portable intelligent and multifunctional biosensors embedded on a single chip, which are used for current public health emergencies. The article discusses in detail the advancements in MXene fabrication, physicochemical properties, and the application prospects of MXene-based biosensors in the medical field, as well as the sustainability and challenges associated with these technologies.

BIOSENSORS & BIOELECTRONICS (2023)

Article Biophysics

Fabricated Metal-Organic Frameworks (MOFs) as luminescent and electrochemical biosensors for cancer biomarkers detection

Brij Mohan, Sandeep Kumar, Hui Xi, Shixuan Ma, Zhiyu Tao, Tiantian Xing, Hengzhi You, Yang Zhang, Peng Ren

Summary: The study focuses on the application of sensors made of porous metal-organic frameworks (MOFs) in cancer biomarker detection, analyzing factors such as fabrication strategies and structural properties that influence sensing performance, and proposes an innovative technique for detecting cancer biomarkers using luminescence and electrochemical sensors.

BIOSENSORS & BIOELECTRONICS (2022)

Article Biochemistry & Molecular Biology

Ag doped Sn3O4 nanostructure and immobilized on hyperbranched polypyrrole for visible light sensitized photocatalytic, antibacterial agent and microbial detection process

Ashkan Bahadoran, Nooshin Bahadoran Baghbadorani, Jeffrey Roshan De Lile, Saeid Masudy-Panah, Behzad Sadeghi, Jinghan Li, Seeram Ramakrishna, Qinglei Liu, Baadal Jushi Janani, Ali Fakhri

Summary: This project investigates Ag doped Sn3O4 nanostructure immobilized on hyperbranched polypyrrole. The product is synthesized by hydrothermal synthesis method. The surface and structural characteristics are studied through instrumental analysis. The nanocomposite exhibits excellent photocatalytic activity under visible light.

JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY (2022)

Article Biophysics

Exploiting the orthogonal CRISPR-Cas12a/Cas13a trans-cleavage for dual-gene virus detection using a handheld device

Tian Tian, Zhiqiang Qiu, Yongzhong Jiang, Debin Zhu, Xiaoming Zhou

Summary: This study introduces a highly efficient dual-gene detection technique based on the orthogonal DNA/RNA collateral cleavage mechanism of the Cas12a/Cas13a system. The technique allows simultaneous detection of multiple amplified products and can be implemented on a portable device for accurate infectious disease screening in resource-limited settings.

BIOSENSORS & BIOELECTRONICS (2022)

Article Biochemistry & Molecular Biology

Withanone and Withaferin-A are predicted to interact with transmembrane protease serine 2 (TMPRSS2) and block entry of SARS-CoV-2 into cells

Vipul Kumar, Jaspreet Kaur Dhanjal, Priyanshu Bhargava, Ashish Kaul, Jia Wang, Huayue Zhang, Sunil C. Kaul, Renu Wadhwa, Durai Sundar

Summary: A study examined the binding potential of natural compounds Withaferin-A, Withanone, and caffeic acid phenethyl ester to the cell surface receptor TMPRSS2 using molecular docking and molecular dynamics simulations. The results showed that Withanone had stronger interactions with TMPRSS2 and was able to induce changes in its allosteric site. Furthermore, Withanone downregulated TMPRSS2 mRNA expression, suggesting its potential dual action in blocking SARS-CoV-2 entry into host cells.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2022)

Article Biochemistry & Molecular Biology

Identification of selective cyclin-dependent kinase 2 inhibitor from the library of pyrrolone-fused benzosuberene compounds: an in silico exploration

Rahul Singh, Vijay Kumar Bhardwaj, Jatin Sharma, Pralay Das, Rituraj Purohit

Summary: The study focuses on the overexpression of CDK2 in relation to cancer, aiming to design new inhibitors to suppress cancer cell proliferation. Comparison with standard inhibitors showed Ligand2 as a potential selective inhibitor for CDK2, with low side effects, based on ligand efficiency and binding affinity.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2022)

Article Biophysics

An ultrasensitive molecularly imprinted polymer-based electrochemical sensor for the determination of SARS-CoV-2-RBD by using macroporous gold screen-printed electrode

Mahmoud Amouzadeh Tabrizi, Juan P. Fernandez-Blazquez, Dahiana Mojena Medina, Pablo Acedo

Summary: A novel molecularly imprinted polymer-based electrochemical sensor has been developed for the determination of SARS-CoV-2-RBD. The fabricated sensor showed high selectivity, sensitivity, and stability in detecting SARS-CoV-2-RBD in saliva samples. The sensor exhibited a good response in a concentration range of 2.0 to 40.0 pg mL(-1) with a low detection limit of 0.7 pg mL(-1).

BIOSENSORS & BIOELECTRONICS (2022)

Article Biochemistry & Molecular Biology

Novel chalcones derivatives with potential antineoplastic activity investigated by docking and molecular dynamics simulations

Raimundo de A. M. Neto, Cleydson B. R. Santos, Shayanne V. C. Henriques, Leticia de O. Machado, Jorddy N. Cruz, Carlos H. T. de P. da Silva, Leonardo B. Federico, Edivaldo H. C. de Oliveira, Michel P. C. de Souza, Patricia N. B. da Silva, Carlton A. Taft, Irlon M. Ferreira, Madson R. F. Gomes

Summary: This study evaluated the antineoplastic activity of synthetic chalcones in glioblastoma models, showing that these compounds can significantly reduce the viability of tumor cells and interact with serine and lysine amino acids, suggesting potential for inhibiting tumor growth. Molecular dynamics studies were also conducted to investigate the binding mechanism of these compounds with tubulin.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2022)