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Hagen Tilgner et al.
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An integrated encyclopedia of DNA elements in the human genome
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The UCSC Genome Browser database: extensions and updates 2011
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Jason Merkin et al.
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Roselyne M. Labbe et al.
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The evolution of gene expression levels in mammalian organs
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Charles J. David et al.
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BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
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Ross D. Alexander et al.
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Timothy W. Nilsen et al.
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David R. McIlwain et al.
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Jeremy Goecks et al.
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Noah Spies et al.
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Da Wei Huang et al.
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Hagen Tilgner et al.
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Chromatin organization marks exon-intron structure
Schraga Schwartz et al.
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Ben Langmead et al.
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Arneet L. Saltzman et al.
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Manuel Irimia et al.
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Liana F. Lareau et al.
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Ying Li et al.
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Maria Kalyna et al.
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B Giardine et al.
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PAF Galante et al.
RNA (2004)
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H Ner-Gaon et al.
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M Kanehisa et al.
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Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals
G Yeo et al.
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YW Fong et al.
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R Miki et al.
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