相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Newly evolved genes: Moving from comparative genomics to functional studies in model systems
Jose M. Ranz et al.
BIOESSAYS (2012)
Adaptive Evolution of C4 Photosynthesis through Recurrent Lateral Gene Transfer
Pascal-Antoine Christin et al.
CURRENT BIOLOGY (2012)
Proto-genes and de novo gene birth
Anne-Ruxandra Carvunis et al.
NATURE (2012)
A beginner's guide to eukaryotic genome annotation
Mark Yandell et al.
NATURE REVIEWS GENETICS (2012)
FlyBase 101-the basics of navigating FlyBase
Peter McQuilton et al.
NUCLEIC ACIDS RESEARCH (2012)
The Pfam protein families database
Marco Punta et al.
NUCLEIC ACIDS RESEARCH (2012)
Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee
Ricardo Acuna et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes
Daniel G. MacArthur et al.
SCIENCE (2012)
The genomic impact of 100 million years of social evolution in seven ant species
Juergen Gadau et al.
TRENDS IN GENETICS (2012)
Comparative Genetics and Genomics of Nematodes: Genome Structure, Development, and Lifestyle
Ralf J. Sommer et al.
ANNUAL REVIEW OF GENETICS, VOL 45 (2011)
Exonization of transposed elements: A challenge and opportunity for evolution
Juergen Schmitz et al.
BIOCHIMIE (2011)
Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana
Mark T. A. Donoghue et al.
BMC EVOLUTIONARY BIOLOGY (2011)
Taxonomically restricted genes are associated with the evolution of sociality in the honey bee
Brian R. Johnson et al.
BMC GENOMICS (2011)
Horizontal gene transfer in silkworm, Bombyx mori
Bo Zhu et al.
BMC GENOMICS (2011)
Putatively Noncoding Transcripts Show Extensive Association with Ribosomes
Benjamin A. Wilson et al.
GENOME BIOLOGY AND EVOLUTION (2011)
Effects of Inversions on Within- and Between-Species Recombination and Divergence
Laurie S. Stevison et al.
GENOME BIOLOGY AND EVOLUTION (2011)
The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming
Sanne Nygaard et al.
GENOME RESEARCH (2011)
The genome of Tetranychus urticae reveals herbivorous pest adaptations
Miodrag Grbic et al.
NATURE (2011)
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
Tina T. Hu et al.
NATURE GENETICS (2011)
The evolutionary origin of orphan genes
Diethard Tautz et al.
NATURE REVIEWS GENETICS (2011)
Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera
Monica C. Munoz-Torres et al.
NUCLEIC ACIDS RESEARCH (2011)
Rapid Evolution of Coral Proteins Responsible for Interaction with the Environment
Christian R. Voolstra et al.
PLOS ONE (2011)
Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)
Christopher D. Smith et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The genome of the fire ant Solenopsis invicta
Yannick Wurm et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Draft genome of the red harvester ant Pogonomyrmex barbatus
Chris R. Smith et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The Ecoresponsive Genome of Daphnia pulex
John K. Colbourne et al.
SCIENCE (2011)
Creating a Buzz About Insect Genomes
Gene E. Robinson et al.
SCIENCE (2011)
Horizontal gene transfer between bacteria and animals
Julie C. Dunning Hotopp
TRENDS IN GENETICS (2011)
Accelerated Recruitment of New Brain Development Genes into the Human Genome
Yong E. Zhang et al.
PLOS BIOLOGY (2011)
De Novo Origins of Human Genes
Daniele Guerzoni et al.
PLOS GENETICS (2011)
The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle
Garret Suen et al.
PLOS GENETICS (2011)
De Novo Origin of Human Protein-Coding Genes
Dong-Dong Wu et al.
PLOS GENETICS (2011)
Structural Variation in the Human Genome and its Role in Disease
Pawel Stankiewicz et al.
ANNUAL REVIEW OF MEDICINE (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Gene Duplication and Environmental Adaptation within Yeast Populations
Ryan M. Ames et al.
GENOME BIOLOGY AND EVOLUTION (2010)
Origins, evolution, and phenotypic impact of new genes
Henrik Kaessmann
GENOME RESEARCH (2010)
AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome
F. Legeai et al.
INSECT MOLECULAR BIOLOGY (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum
Hee Shin Kim et al.
NUCLEIC ACIDS RESEARCH (2010)
SilkDB v2.0: a platform for silkworm (Bombyx mori) genome biology
Jun Duan et al.
NUCLEIC ACIDS RESEARCH (2010)
Genomic Comparison of the Ants Camponotus floridanus and Harpegnathos saltator
Roberto Bonasio et al.
SCIENCE (2010)
New Genes in Drosophila Quickly Become Essential
Sidi Chen et al.
SCIENCE (2010)
Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species
John H. Werren et al.
SCIENCE (2010)
Lateral Transfer of Genes from Fungi Underlies Carotenoid Production in Aphids
Nancy A. Moran et al.
SCIENCE (2010)
New tricks with old genes: the genetic bases of novel cnidarian traits
Sylvain Foret et al.
TRENDS IN GENETICS (2010)
Horizontal gene transfer between Wolbachia and the mosquito Aedes aegypti
Lisa Klasson et al.
BMC GENOMICS (2009)
Retroelements and their impact on genome evolution and functioning
Elena Gogvadze et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2009)
Duplication hotspots, rare genomic disorders, and common disease
Heather C. Mefford et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2009)
The adaptive role of transposable elements in the Drosophila genome
Josefa Gonzalez et al.
GENE (2009)
The Contribution of Transposable Elements to Expressed Coding Sequence in Arabidopsis thaliana
Steven Lockton et al.
JOURNAL OF MOLECULAR EVOLUTION (2009)
Origin of Primate Orphan Genes: A Comparative Genomics Approach
Macarena Toll-Riera et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
VectorBase: a data resource for invertebrate vector genomics
Daniel Lawson et al.
NUCLEIC ACIDS RESEARCH (2009)
More than just orphans: are taxonomically-restricted genes important in evolution?
Konstantin Khalturin et al.
TRENDS IN GENETICS (2009)
Characterization of taxonomically restricted genes in a phylum-restricted cell type
Sabine Milde et al.
GENOME BIOLOGY (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
The Impact of Natural Selection on the Genome: Emerging Patterns in Drosophila and Arabidopsis
Stephen I. Wright et al.
ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS (2008)
Alternative translation start sites and hidden coding potential of eukaryotic mRNAs
Alex V. Kochetov
BIOESSAYS (2008)
Non-random retention of protein-coding overlapping genes in Metazoa
Giulia Solda et al.
BMC GENOMICS (2008)
Overlapping genes in the human and mouse genomes
Chaitanya R. Sanna et al.
BMC GENOMICS (2008)
Evo-devo and an expanding evolutionary synthesis: A genetic theory of morphological evolution
Sean B. Carroll
CELL (2008)
De novo origination of a new protein-coding gene in Saccharomyces cerevisiae
Jing Cai et al.
GENETICS (2008)
On the origin of new genes in Drosophila
Qi Zhou et al.
GENOME RESEARCH (2008)
Wolbachia genome integrated in an insect chromosome:: Evolution and fate of laterally transferred endosymbiont genes
Naruo Nikoh et al.
GENOME RESEARCH (2008)
Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes
Dacheng Tian et al.
NATURE (2008)
Alternative splicing of Alu exons -: two arms are better than one
Nurit Gal-Mark et al.
NUCLEIC ACIDS RESEARCH (2008)
Massive horizontal gene transfer in bdelloid rotifers
Eugene A. Gladyshev et al.
SCIENCE (2008)
A Novel Gene Family Controls Species-Specific Morphological Traits in Hydra
Konstantin Khalturin et al.
PLOS BIOLOGY (2008)
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
Brandi L. Cantarel et al.
GENOME RESEARCH (2008)
Evolutionary developmental biology and genomics
Cristian Canestro et al.
NATURE REVIEWS GENETICS (2007)
Evolution of genes and genomes on the Drosophila phylogeny
Andrew G. Clark et al.
NATURE (2007)
Drosophila biology in the genomic age
Therese Ann Markow et al.
GENETICS (2007)
Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes
Julie C. Dunning Hotopp et al.
SCIENCE (2007)
Transcriptional interferences in cis natural antisense transcripts of humans and mice
Naoki Osato et al.
GENETICS (2007)
Emerging principles of regulatory evolution
Benjamin Prud'homme et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The evolution of retrotransposon regulatory regions and its consequences on the Drosophila melanogaster and Homo sapiens host genomes
Manie Fablet et al.
GENE (2007)
Large-Scale Comparative Genomic Ranking of Taxonomically Restricted Genes (TRGs) in Bacterial and Archaeal Genomes
Gareth A. Wilson et al.
PLOS ONE (2007)
In-frame overlapping genes: The challenges for regulating gene expression
Jae-Sung Yu et al.
MOLECULAR MICROBIOLOGY (2007)
Frequent appearance of novel protein-coding sequences by frameshift translation
Kohji Okamura et al.
GENOMICS (2006)
TimeTree: a public knowledge-base of divergence times among organisms
S. Blair Hedges et al.
BIOINFORMATICS (2006)
Evaluating alternative hypotheses for the early evolution and diversification of ants
Sean G. Brady et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Insights into social insects from the genome of the honeybee Apis mellifera
George M. Weinstock et al.
NATURE (2006)
Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression
Mia T. Levine et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Hotspots for copy number variation in chimpanzees and humans
George H. Perry et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Phylogeny of the ants: Diversification in the age of angiosperms
CS Moreau et al.
SCIENCE (2006)
Distribution and prevalence of Wolbachia in introduced populations of the fire ant Solenopsis invicta
AM Bouwma et al.
INSECT MOLECULAR BIOLOGY (2006)
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae:: Implications for the microbial pan-genome
H Tettelin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Functional divergence of proteins through frameshift mutations
J Raes et al.
TRENDS IN GENETICS (2005)
Identification of nine human-specific frameshift mutations by comparative analysis of the human and the chimpanzee genome sequences
Y Hahn et al.
BIOINFORMATICS (2005)
Sociality and the rate of molecular evolution
L Bromham et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
The rise of the ants:: A phylogenetic and ecological explanation
EO Wilson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
TD Wu et al.
BIOINFORMATICS (2005)
Repbase update, a database of eukaryotic repetitive elements
J Jurka et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
Mobile elements: Drivers of genome evolution
HH Kazazian
SCIENCE (2004)
Determination of the core of a minimal bacterial gene set
R Gil et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2004)
Large-scale analysis of pseudogenes in the human genome
ZL Zhang et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2004)
Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks
K Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
GeneWise and genomewise
E Birney et al.
GENOME RESEARCH (2004)
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
DM Krylov et al.
GENOME RESEARCH (2003)
An evolutionary analysis of orphan genes in Drosophila
T Domazet-Loso et al.
GENOME RESEARCH (2003)
The COG database: an updated version includes eukaryotes
RL Tatusov et al.
BMC BIOINFORMATICS (2003)
The genome sequence of Blochmannia floridanus:: Comparative analysis of reduced genomes
R Gil et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Evolution by gene duplication: an update
JZ Zhang
TRENDS IN ECOLOGY & EVOLUTION (2003)
The genetic core of the universal ancestor
JK Harris et al.
GENOME RESEARCH (2003)
The origin of new genes: Glimpses from the young and old
M Long et al.
NATURE REVIEWS GENETICS (2003)
Transcriptional collision between convergent genes in budding yeast
EM Prescott et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Wolbachia in leafcutter ants: a widespread symbiont that may induce male killing or incompatible matings
S Van Borm et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2001)
Evolution of the angiosperms:: calibrating the family tree
N Wikström et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2001)
Chromosomal inversions and the reproductive isolation of species
MAF Noor et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Initial sequencing and analysis of the human genome
ES Lander et al.
NATURE (2001)
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
S Kaul et al.
NATURE (2000)
The evolutionary fate and consequences of duplicate genes
M Lynch et al.
SCIENCE (2000)
The genome sequence of Drosophila melanogaster
MD Adams et al.
SCIENCE (2000)
分享论文
