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Chih-Horng Kuo et al.
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Patrick H. Degnan et al.
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Jeffrey J. Coleman et al.
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M Lynch
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De novo identification of repeat families in large genomes
AL Price et al.
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MUSCLE: a multiple sequence alignment method with reduced time and space complexity
RC Edgar
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E Birney et al.
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S Shigenobu et al.
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Y Hongoh et al.
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