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Jyotirmoy Das et al.
FEBS LETTERS (2013)
Evolutionary Rate and Duplicability in the Arabidopsis thaliana Protein-Protein Interaction Network
David Alvarez-Ponce et al.
GENOME BIOLOGY AND EVOLUTION (2012)
MINT, the molecular interaction database: 2012 update
Luana Licata et al.
NUCLEIC ACIDS RESEARCH (2012)
The IntAct molecular interaction database in 2012
Samuel Kerrien et al.
NUCLEIC ACIDS RESEARCH (2012)
OGEE: an online gene essentiality database
Wei-Hua Chen et al.
NUCLEIC ACIDS RESEARCH (2012)
Saccharomyces Genome Database: the genomics resource of budding yeast
J. Michael Cherry et al.
NUCLEIC ACIDS RESEARCH (2012)
KEGG for integration and interpretation of large-scale molecular data sets
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2012)
GOChase-II: correcting semantic inconsistencies from Gene Ontology-based annotations for gene products
Yu Rang Park et al.
BMC BIOINFORMATICS (2011)
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Pablo Razeto-Barry et al.
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Factors that Contribute to Variation in Evolutionary Rate among Arabidopsis Genes
Liang Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast
Christian Miller et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
MIPS: curated databases and comprehensive secondary data resources in 2010
H. Werner Mewes et al.
NUCLEIC ACIDS RESEARCH (2011)
Ensembl 2011
Paul Flicek et al.
NUCLEIC ACIDS RESEARCH (2011)
Insights into Eukaryotic Interacting Protein Evolution
Sandip Chakraborty et al.
EVOLUTIONARY BIOLOGY: CONCEPTS, BIODIVERSITY, MACROEVOLUTION AND GENOME EVOLUTION (2011)
Protein complex forming ability is favored over the features of interacting partners in determining the evolutionary rates of proteins in the yeast protein-protein interaction networks
Sandip Chakraborty et al.
BMC SYSTEMS BIOLOGY (2010)
A Preliminary Analysis of Gene Pleiotropy Estimated from Protein Sequences
Zhixi Su et al.
JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION (2010)
A Consensus of Core Protein Complex Compositions for Saccharomyces cerevisiae
Joris J. Benschop et al.
MOLECULAR CELL (2010)
Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions
Roland A. Pache et al.
BMC SYSTEMS BIOLOGY (2009)
Multifunctionality dominantly determines the rate of human housekeeping and tissue specific interacting protein evolution
Soumita Podder et al.
GENE (2009)
A structural approach for finding functional modules from large biological networks
Mutlu Mete et al.
BMC BIOINFORMATICS (2008)
A simple principle concerning the robustness of protein complex activity to changes in gene expression
Jennifer I. Semple et al.
BMC SYSTEMS BIOLOGY (2008)
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
D. Allan Drummond et al.
CELL (2008)
Are protein complexes made of cores, modules and attachments?
Chi Nam Ignatius Pang et al.
PROTEOMICS (2008)
Predicting co-complexed protein pairs from heterogeneous data
Jian Qiu et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Clustal W and clustal X version 2.0
M. A. Larkin et al.
BIOINFORMATICS (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality
G. Traver Hart et al.
BMC BIOINFORMATICS (2007)
Identifying functional modules in the physical interactome of Saccharomyces cerevisiae
Shuye Pu et al.
PROTEOMICS (2007)
Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins
Ben-Yang Liao et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Evolutionary and physiological importance of hub proteins
Nizar N. Batada et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
An integrated view of protein evolution
C Pál et al.
NATURE REVIEWS GENETICS (2006)
The effect of multifunctionality on the rate of evolution in yeast
M Salathé et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
The evolutionary rate of a protein is influenced by features of the interacting partners
T Makino et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Proteome survey reveals modularity of the yeast cell machinery
AC Gavin et al.
NATURE (2006)
The origins and evolution of functional modules: lessons from protein complexes
JB Pereira-Leal et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)
Evolutionary rates and expression level in Chlamydomonas
CE Popescu et al.
GENETICS (2006)
A single determinant dominates the rate of yeast protein evolution
DA Drummond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Why highly expressed proteins evolve slowly
DA Drummond et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
A procedure for assessing GO annotation consistency
ME Dolan et al.
BIOINFORMATICS (2005)
Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions
B Lemos et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks
MW Hahn et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
CYGD: the comprehensive Yeast Genome Database
U Guldener et al.
NUCLEIC ACIDS RESEARCH (2005)
Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome
S Subramanian et al.
GENETICS (2004)
The Database of Interacting Proteins: 2004 update
L Salwinski et al.
NUCLEIC ACIDS RESEARCH (2004)
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology
E Camon et al.
NUCLEIC ACIDS RESEARCH (2004)
Bioinformatics analysis of experimentally determined protein complexes in the yeast Saccharomyces cerevisiae
Z Dezso et al.
GENOME RESEARCH (2003)
Sequencing and comparison of yeast species to identify genes and regulatory elements
M Kellis et al.
NATURE (2003)
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
Y Arava et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
A simple dependence between protein evolution rate and the number of protein-protein interactions
HB Fraser et al.
BMC EVOLUTIONARY BIOLOGY (2003)
The constraints protein-protein interactions place on sequence divergence
SA Teichmann
JOURNAL OF MOLECULAR BIOLOGY (2002)
Essential genes are more evolutionarily conserved than are nonessential genes in bacteria
IK Jordan et al.
GENOME RESEARCH (2002)
Protein interactions - Two methods for assessment of the reliability of high throughput observations
CM Deane et al.
MOLECULAR & CELLULAR PROTEOMICS (2002)
Evolutionary rate in the protein interaction network
HB Fraser et al.
SCIENCE (2002)
Gene expression and molecular evolution
H Akashi
CURRENT OPINION IN GENETICS & DEVELOPMENT (2001)
Protein dispensability and rate of evolution
AE Hirsh et al.
NATURE (2001)
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
ZH Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2000)
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