期刊
FUNGAL GENETICS AND BIOLOGY
卷 48, 期 4, 页码 353-358出版社
ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.fgb.2010.11.001
关键词
Functional annotation; Fungi; Gene Ontology; FunCat; KEGG; Classification; Enrichment analysis; Candida; Aspergillus; Yeast
资金
- German Ministry for Education and Research (Bundesministerium far Bildung und Forschung - BMBF) [0315581]
- DFG
- excellence graduate school Jena School for Microbial Communication (JSMC)
FungiFun assigns functional annotations to fungal genes or proteins and performs gene set enrichment analysis. Based on three different classification methods (FunCat, GO and KEGG), FungiFun categorizes genes and proteins for several fungal species on different levels of annotation detail. It is web-based and accessible to users without any programming skills. FungiFun is the first tool offering gene set enrichment analysis including the FunCat categorization. Two biological datasets for Aspergillus fumigatus and Candida albicans were analyzed using FungiFun, providing an overview of the usage and functions of the tool. FungiFun is freely accessible at https://www.omnifung.hki-jena.de/FungiFun/. (c) 2010 Elsevier Inc. All rights reserved.
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