4.2 Review

Breaking the histone code with quantitative mass spectrometry

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

SILAC-based proteomic analysis to dissect the histone modification signature of human breast cancer cells

Alessandro Cuomo et al.

AMINO ACIDS (2011)

Review Biochemistry & Molecular Biology

Quantitative Proteomics for Epigenetics

H. Christian Eberl et al.

CHEMBIOCHEM (2011)

Article Biochemistry & Molecular Biology

Influence of Combinatorial Histone Modifications on Antibody and Effector Protein Recognition

Stephen M. Fuchs et al.

CURRENT BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Symmetrical modification within a nucleosome is not required globally for histone lysine methylation

Xiuzhen Chen et al.

EMBO REPORTS (2011)

Article Multidisciplinary Sciences

Identification of Lysine 37 of Histone H2B as a Novel Site of Methylation

Kathryn E. Gardner et al.

PLOS ONE (2011)

Article Biochemistry & Molecular Biology

Mapping of Lysine Methylation and Acetylation in Core Histones of Neurospora crassa

Lei Xiong et al.

BIOCHEMISTRY (2010)

Review Biochemical Research Methods

Systems-wide proteomic characterization of combinatorial post-translational modification patterns

Nicolas L. Young et al.

EXPERT REVIEW OF PROTEOMICS (2010)

Article Physiology

Modern approaches for investigating epigenetic signaling pathways

Adam G. Evertts et al.

JOURNAL OF APPLIED PHYSIOLOGY (2010)

Article Biochemistry & Molecular Biology

In Vivo Residue-specific Histone Methylation Dynamics

Barry M. Zee et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

Article Biochemistry & Molecular Biology

A Modified Cross-talk between Histone H2B Lys-120 Ubiquitination and H3 Lys-79 Methylation

Agus Darwanto et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

Article Biochemistry & Molecular Biology

Kinetics of Re-establishing H3K79 Methylation Marks in Global Human Chromatin

Steve M. M. Sweet et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

Article Biochemical Research Methods

What Does the Future Hold for Top Down Mass Spectrometry?

Benjamin A. Garcia

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2010)

Article Biochemistry & Molecular Biology

Quantitative proteomics reveals direct and indirect alterations in the histone code following methyltransferase knockdown

Mariana D. Plazas-Mayorca et al.

MOLECULAR BIOSYSTEMS (2010)

Article Biochemistry & Molecular Biology

Combinatorial profiling of chromatin binding modules reveals multisite discrimination

Adam L. Garske et al.

NATURE CHEMICAL BIOLOGY (2010)

Review Cell Biology

Histone variants - ancient wrap artists of the epigenome

Paul B. Talbert et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

PARP1 ADP-ribosylates lysine residues of the core histone tails

Simon Messner et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

β-N-acetylglucosamine (O-GlcNAc) is part of the histone code

Kaoru Sakabe et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Genetics & Heredity

Histone H1 variant-specific lysine methylation by G9a/KMT1C and Glp1/KMT1D

Thomas Weiss et al.

EPIGENETICS & CHROMATIN (2010)

Article Genetics & Heredity

Global turnover of histone post-translational modifications and variants in human cells

Barry M. Zee et al.

EPIGENETICS & CHROMATIN (2010)

Review Genetics & Heredity

Histones: Annotating Chromatin

Eric I. Campos et al.

ANNUAL REVIEW OF GENETICS (2009)

Article Biochemistry & Molecular Biology

Purification of Proteins Associated with Specific Genomic Loci

Jerome Dejardin et al.

Article Biochemistry & Molecular Biology

Phosphorylation of Histone H3 Thr-45 Is Linked to Apoptosis

Paul J. Hurd et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Biochemical Research Methods

One-Pot Shotgun Quantitative Mass Spectrometry Characterization of Histones

Mariana D. Plazas-Mayorca et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Article Biochemical Research Methods

Comprehensive Mapping of Post-Translational Modifications on Synaptic, Nuclear, and Histone Proteins in the Adult Mouse Brain

Ry Y. Tweedie-Cullen et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Article Biochemical Research Methods

Molecular Characterization of Propionyllysines in Non-histone Proteins

Zhongyi Cheng et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Article Biochemical Research Methods

High Throughput Characterization of Combinatorial Histone Codes

Nicolas L. Young et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Article Multidisciplinary Sciences

Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger

Gang G. Wang et al.

NATURE (2009)

Review Genetics & Heredity

ChIP-seq: advantages and challenges of a maturing technology

Peter J. Park

NATURE REVIEWS GENETICS (2009)

Article Biochemistry & Molecular Biology

Establishment of Histone Modifications after Chromatin Assembly

Annette N. D. Scharf et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemical Research Methods

Unbiased proteomic screen for binding proteins to modified lysines on histone H3

Doug W. Chan et al.

PROTEOMICS (2009)

Article Chemistry, Analytical

Interpreting top-down mass spectra using spectral alignment

Ari M. Frank et al.

ANALYTICAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

Unraveling the histone's potential A proteomics perspective

Justin Brumbaugh et al.

EPIGENETICS (2008)

Article Biochemistry & Molecular Biology

Combinatorial modification of human histone H4 quantitated by two-dimensional liquid chromatography coupled with top down mass spectrometry

James J. Pesavento et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Biochemical Research Methods

Tissue-specific expression and post-translational modification of histone H3 variants

Benjamin A. Garcia et al.

JOURNAL OF PROTEOME RESEARCH (2008)

Article Biochemistry & Molecular Biology

The double bromodomain proteins Brd2 and Brd3 couple histone acetylation to transcription

Gary LeRoy et al.

MOLECULAR CELL (2008)

Editorial Material Multidisciplinary Sciences

Moving AHEAD with an international human epigenome project

Peter A. Jones et al.

NATURE (2008)

Article Genetics & Heredity

Combinatorial patterns of histone acetylations and methylations in the human genome

Zhibin Wang et al.

NATURE GENETICS (2008)

Article Multidisciplinary Sciences

Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells

Doug Phanstiel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

Certain and progressive methylation of histone H4 at lysine 20 during the cell cycle

James J. Pesavento et al.

MOLECULAR AND CELLULAR BIOLOGY (2008)

Article Biochemical Research Methods

Analysis of dynamic changes in post-translational modifications of human histones during cell cycle by mass spectrometry

Debora Bonenfant et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemistry & Molecular Biology

Histone modifications in Trypanosoma brucei

Veena Mandava et al.

MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2007)

Article Biochemistry & Molecular Biology

Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4

Michiel Vermeulen et al.

Article Biochemistry & Molecular Biology

Global assessment of combinatorial post-translational modification of core histones in yeast using contemporary mass spectrometry

Lihua Jiang et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Biochemical Research Methods

Charactorization of post-translational modifications of histone H2B-variants isolated from Arabidopsis thaliana

Eveline Bergmueller et al.

JOURNAL OF PROTEOME RESEARCH (2007)

Review Biochemical Research Methods

Functional proteomics in histone research and epigenetics

Morten Beck Trelle et al.

EXPERT REVIEW OF PROTEOMICS (2007)

Article Biochemical Research Methods

Pervasive combinatorial modification of histone H3 in human cells

Benjamin A. Garcia et al.

NATURE METHODS (2007)

Article Biochemical Research Methods

Characterization of antimicrobial histone sequences and posttranslational modifications by mass spectrometry

Severine A. Ouvry-Patat et al.

JOURNAL OF MASS SPECTROMETRY (2007)

Article Biochemical Research Methods

Lysine propionylation and butyrylation are novel post-translational modifications in histones

Yue Chen et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemistry & Molecular Biology

Identification of histone H3 lysine 36 acetylation as a highly conserved histone modification

Stephanie A. Morris et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Multidisciplinary Sciences

Long-distance combinatorial linkage between methylation and acetylation on histone H3N termini

Sean D. Taverna et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemical Research Methods

Chemical derivatization of histones for facilitated analysis by mass spectrometry

Benjamin A. Garcia et al.

NATURE PROTOCOLS (2007)

Article Biochemical Research Methods

Comprehensive phosphoprotein analysis of linker histone H1 from Tetrahymena thermophila

Benjamin A. Garcia et al.

MOLECULAR & CELLULAR PROTEOMICS (2006)

Article Biochemical Research Methods

Precise characterization of human histories in the H2A gene family by top down mass spectrometry

MT Boyne et al.

JOURNAL OF PROTEOME RESEARCH (2006)

Article Biochemical Research Methods

Mass spectrometric characterization of human histone H3: A bird's eye view

CE Thomas et al.

JOURNAL OF PROTEOME RESEARCH (2006)

Article Biochemical Research Methods

Gene-specific characterization of human histone H2B by electron capture dissociation

N Siuti et al.

JOURNAL OF PROTEOME RESEARCH (2006)

Article Biochemistry & Molecular Biology

Translating the histone code into leukemia

BE Linggi et al.

JOURNAL OF CELLULAR BIOCHEMISTRY (2005)

Article Multidisciplinary Sciences

Protein identification using sequential ion/ion reactions and tandem mass spectrometry

JJ Coon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Review Cell Biology

Effector proteins for methylated histones - An expanding family

JA Daniel et al.

CELL CYCLE (2005)

Article Multidisciplinary Sciences

Global histone modification patterns predict risk of prostate cancer recurrence

DB Seligson et al.

NATURE (2005)

Article Cell Biology

Proteomic and genomic characterization of chromatin complexes at a boundary

AJ Tackett et al.

JOURNAL OF CELL BIOLOGY (2005)

Article Multidisciplinary Sciences

Microdeletion of target sites for insulator protein CTCF in a chromosome 11p15 imprinting center in Beckwith-Wiedemann syndrome and Wilms' tumor

D Prawitt et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Chemistry, Multidisciplinary

Shotgun annotation of histone modifications: A new approach for streamlined characterization of proteins by top down mass spectrometry

JJ Pesavento et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)

Article Multidisciplinary Sciences

Histone H3.3 is enriched in covalent modifications associated with active chromatin

E McKittrick et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Multidisciplinary Sciences

Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry

JEP Syka et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemical Research Methods

Identifying and quantifying in vivo methylation sites by heavy methyl SILAC

SE Ong et al.

NATURE METHODS (2004)

Article Clinical Neurology

Identification of MeCP2 mutations in a series of females with autistic disorder

RM Carney et al.

PEDIATRIC NEUROLOGY (2003)

Article Biochemistry & Molecular Biology

Partitioning and plasticity of repressive histone methylation states in mammalian chromatin

AHFM Peters et al.

MOLECULAR CELL (2003)

Article Multidisciplinary Sciences

Heritable chromatin structure: Mapping memory in histones H3 and H4

CM Smith et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Review Multidisciplinary Sciences

Translating the histone code

T Jenuwein et al.

SCIENCE (2001)

Article Multidisciplinary Sciences

Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins

M Lachner et al.

NATURE (2001)

Article Multidisciplinary Sciences

The language of covalent histone modifications

BD Strahl et al.

NATURE (2000)