相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Characterization of poly(ethylene glycol)-b-poly(ε-caprolactone) by two-dimensional liquid chromatography
Hasnat Ahmed et al.
JOURNAL OF SEPARATION SCIENCE (2009)
Surface-induced dissociation of peptides and protein complexes in a quadrupole/Time-of-Flight mass spectrometer
Asiri S. Galhena et al.
ANALYTICAL CHEMISTRY (2008)
Application of MALDI/SELDI Mass Spectrometry to Cancer Biomarker Discovery and Validation
Farid Ahmed
Current Proteomics (2008)
Mining the oncoproteome and studying molecular interactions for biomarker development by 2DE, ChIP and SPR technologies
Farid E. Ahmed
EXPERT REVIEW OF PROTEOMICS (2008)
Utility of mass spectrometry for proteome analysis: part I. Conceptual and experimental approaches
Farid E. Ahmed
EXPERT REVIEW OF PROTEOMICS (2008)
A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer
Graeme C. McAlister et al.
JOURNAL OF PROTEOME RESEARCH (2008)
The influence of sample preparation and replicate analyses on HeLa cell phosphoproteome coverage
Bryan M. Ham et al.
JOURNAL OF PROTEOME RESEARCH (2008)
An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data
Lukas N. Mueller et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Surface-induced dissociation of small molecules, peptides,and non-covalent protein complexes
Vicki H. Wysocki et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2008)
Laser desorption/ionization mass spectrometry on porous silica and alumina for peptide mass fingerprinting
Nawar Shenar et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2008)
Surface-induced dissociation shows potential to be more informative than collision-induced dissociation for structural studies of large systems
Vicki H. Wysocki et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2008)
Urinary proteomics in diabetes and CKD
Kasper Rossing et al.
JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY (2008)
Decision tree-driven tandem mass spectrometry for shotgun proteomics
Danielle L. Swaney et al.
NATURE METHODS (2008)
A database of mass spectrometric assays for the yeast proteome
Paola Picotti et al.
NATURE METHODS (2008)
Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics
Eric W. Deutsch et al.
PHYSIOLOGICAL GENOMICS (2008)
Parallel post-source decay for increasing protein identification confidence levels from 2-D gels
Asa Wahlander et al.
PROTEOMICS (2008)
An easy-to-use Decoy Database Builder software tool, implementing different decoy strategies for false discovery rate calculation in automated MS/MS protein identifications
Kai A. Reidegeld et al.
PROTEOMICS (2008)
CE-MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics
Joshua J. Coon et al.
PROTEOMICS CLINICAL APPLICATIONS (2008)
PRIDE: new developments and new datasets
Philip Jones et al.
NUCLEIC ACIDS RESEARCH (2008)
Optimizing macromolecular tandem mass spectrometry of large non-covalent complexes using heavy collision gases
Kristina Lorenzen et al.
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY (2007)
Mass spectrometry based proteomics in urine biomarker discovery
Dan Theodorescu et al.
WORLD JOURNAL OF UROLOGY (2007)
High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites
Jianru Stahl-Zeng et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics
Amol Prakash et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
Analysis and validation of proteomic data generated by tandem mass spectrometry
Alexey I. Nesvizhskii et al.
NATURE METHODS (2007)
The minimum information about a proteomics experiment (MIAPE)
Chris F. Taylor et al.
NATURE BIOTECHNOLOGY (2007)
Using bioinformatic resources in the proteomic analysis of biological fluids
Frederique Lisacek et al.
PROTEOMICS CLINICAL APPLICATIONS (2007)
Development and validation of a spectral library searching method for peptide identification from MS/MS
Henry Lam et al.
PROTEOMICS (2007)
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
Joshua E. Elias et al.
NATURE METHODS (2007)
Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry
Henrik Molina et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
Peng Lu et al.
NATURE BIOTECHNOLOGY (2007)
eComputational prediction of proteotypic peptides for quantitative proteomics
Parag Mallick et al.
NATURE BIOTECHNOLOGY (2007)
Database resources of the National Center for Biotechnology Information
David L. Wheeler et al.
NUCLEIC ACIDS RESEARCH (2007)
Emerging methods in proteomics: top-down protein characterization by multistage tandem mass spectrometry
Gwynyth Scherperel et al.
ANALYST (2007)
The utility of ETD mass spectrometry in proteomic analysis
Leann M. Mikesh et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2006)
Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction
Zhengdeng Lei et al.
BMC BIOINFORMATICS (2006)
High resolution proteome/peptidome analysis of body fluids by capillary electrophoresis coupled with MS
Eric Schiffer et al.
PROTEOMICS (2006)
PEPPeR, a platform for experimental proteomic pattern recognition
Jacob D. Jaffe et al.
MOLECULAR & CELLULAR PROTEOMICS (2006)
Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase
Christian Stephan et al.
PROTEOMICS (2006)
The power of cooperative investigation:: Summary and comparison of the HUPO Brain Proteome Project pilot study results
Kai A. Reidegeld et al.
PROTEOMICS (2006)
Protein biomarker discovery and validation: the long and uncertain path to clinical utility
Nader Rifai et al.
NATURE BIOTECHNOLOGY (2006)
Software for computational peptide identification from MS-MS data
Changjiang Xu et al.
DRUG DISCOVERY TODAY (2006)
Biomarker discovery by CE-MS enables sequence analysis via MS/MS with platform-independent separation
Petra Zuerbig et al.
ELECTROPHORESIS (2006)
Review - Mass spectrometry and protein analysis
B Domon et al.
SCIENCE (2006)
Reproducibility of LC-MS-based protein identification
M Berg et al.
JOURNAL OF EXPERIMENTAL BOTANY (2006)
Predicting the clinical outcome of congenital unilateral ureteropelvic junction obstruction in newborn by urinary proteome analysis
S Decramer et al.
NATURE MEDICINE (2006)
Signal maps for mass spectrometry-based comparative proteomics
A Prakash et al.
MOLECULAR & CELLULAR PROTEOMICS (2006)
XCMS: Processing mass spectrometry data for metabolite profiling using Nonlinear peak alignment, matching, and identification
CA Smith et al.
ANALYTICAL CHEMISTRY (2006)
Targeted comparative proteomics by liquid chromatography/matrix-assisted laser desorption/ionization triple-quadrupole mass spectrometry
JE Melanson et al.
RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2006)
Detection of artifacts and peptide modifications in liquid chromatography/mass spectrometry data using two-dimensional signal intensity map data visualization
M Berg et al.
RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2006)
Statistics for proteomics: A review of tools for analyzing experimental data
Wolfgang Urfer et al.
PROTEOMICS (2006)
Absolute quantification of proteins by LCMSE - A virtue of parallel MS acquisition
JC Silva et al.
MOLECULAR & CELLULAR PROTEOMICS (2006)
The PeptideAtlas project
Frank Desiere et al.
NUCLEIC ACIDS RESEARCH (2006)
Bioinformatics and data mining in proteomics
Abdelali Haoudi et al.
EXPERT REVIEW OF PROTEOMICS (2006)
Bioinformatics approaches in clinical proteomics
Eric T. Fung et al.
EXPERT REVIEW OF PROTEOMICS (2005)
Combined top-down and bottom-up mass spectrometric approach to characterization of biomarkers for renal disease
MJ Chalmers et al.
ANALYTICAL CHEMISTRY (2005)
Capillary electrophoresis -: Mass spectrometry as a powerful tool in clinical diagnosis and biomarker discovery
W Kolch et al.
MASS SPECTROMETRY REVIEWS (2005)
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
JE Elias et al.
NATURE METHODS (2005)
Algorithms for alignment of mass spectrometry proteomic data
N Jeffries
BIOINFORMATICS (2005)
Proteomics: From basic research to diagnostic application. A review of requirements & needs
F Vitzthum et al.
JOURNAL OF PROTEOME RESEARCH (2005)
Pilot study of capillary electrophoresis coupled to mass spectrometry as a tool to define potential prostate cancer biomarkers in urine
D Theodorescu et al.
ELECTROPHORESIS (2005)
Scoring proteomes with proteotypic peptide probes
B Kuster et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)
MSight: An image analysis software for liquid chromatography-mass spectrometry
PM Palagi et al.
PROTEOMICS (2005)
Electron transfer dissociation of peptide anions
JJ Coon et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2005)
Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra
Y Chen et al.
JOURNAL OF PROTEOME RESEARCH (2005)
Discovery of biomarkers in human urine and cerebrospinal fluid by capillary electrophoresis coupled to mass spectrometry:: Towards new diagnostic and therapeutic approaches
S Wittke et al.
ELECTROPHORESIS (2005)
Quantitative proteomic analysis by accurate mass retention time pairs
JC Silva et al.
ANALYTICAL CHEMISTRY (2005)
The role of electron capture dissociation in biomolecular analysis
HJ Cooper et al.
MASS SPECTROMETRY REVIEWS (2005)
PepNovo: De novo peptide sequencing via probabilistic network modeling
A Frank et al.
ANALYTICAL CHEMISTRY (2005)
A uniform proteomics MS/MS analysis platform utilizing open XML file formats
Andrew Keller et al.
MOLECULAR SYSTEMS BIOLOGY (2005)
Impact of replicate types on proteomic expression analysis
NA Karp et al.
JOURNAL OF PROTEOME RESEARCH (2005)
Opinion - Rules of evidence for cancer molecular-marker discovery and validation
DF Ransohoff
NATURE REVIEWS CANCER (2004)
Serum peptide profiling by magnetic particle-assisted, automated sample processing and MALDI-TOF mass spectrometry
J Villanueva et al.
ANALYTICAL CHEMISTRY (2004)
FatiGO:: a web tool for finding significant associations of Gene Ontology terms with groups of genes
F Al-Shahrour et al.
BIOINFORMATICS (2004)
Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome
YF Shen et al.
ANALYTICAL CHEMISTRY (2004)
FTICR mass spectrometry for qualitative and quantitative bioanalyses
JS Page et al.
CURRENT OPINION IN BIOTECHNOLOGY (2004)
The ABC's (and XYZ's) of peptide sequencing
H Steen et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2004)
Current chemical tagging strategies for proteome analysis by mass spectrometry
A Leitner et al.
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2004)
Anion dependence in the partitioning between proton and electron transfer in ion/ion reactions
JJ Coon et al.
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY (2004)
Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting
J Samuelsson et al.
BIOINFORMATICS (2004)
A tool to visualize and evaluate data obtained by liquid chromatography-electrospray ionization-mass spectrometry
XJ Li et al.
ANALYTICAL CHEMISTRY (2004)
Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens
GA Satten et al.
BIOINFORMATICS (2004)
Open source system for analyzing, validating, and storing protein identification data
R Craig et al.
JOURNAL OF PROTEOME RESEARCH (2004)
Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry
D Radulovic et al.
MOLECULAR & CELLULAR PROTEOMICS (2004)
Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization
KR Coombes et al.
CLINICAL CHEMISTRY (2003)
Determination of peptides and proteins in human urine with capillary electrophoresis-mass spectrometry, a suitable tool for the establishment of new diagnostic markers
S Wittke et al.
JOURNAL OF CHROMATOGRAPHY A (2003)
A statistical model for identifying proteins by tandem mass spectrometry
AI Nesvizhskii et al.
ANALYTICAL CHEMISTRY (2003)
Protein identification: The origins of peptide mass fingerprinting
WJ Henzel et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2003)
Secondary fragmentation of linear peptides in electron capture dissociation
HJ Cooper et al.
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY (2003)
Energy transfer in collisions of peptide ions with surfaces
J Laskin et al.
JOURNAL OF CHEMICAL PHYSICS (2003)
Combined electron capture and infrared multiphoton dissociation for multistage MS/MS in a Fourier transform ion cyclotron resonance mass spectrometer
K Håkansson et al.
ANALYTICAL CHEMISTRY (2003)
ExPASy: the proteomics server for in-depth protein knowledge and analysis
E Gasteiger et al.
NUCLEIC ACIDS RESEARCH (2003)
Collisional activation of peptide ions in FT-ICR mass spectrometry
J Laskin et al.
MASS SPECTROMETRY REVIEWS (2003)
Data reduction using a discrete wavelet transform in discriminant analysis of very high dimensionality data
YS Qu et al.
BIOMETRICS (2003)
Identifying differentially expressed genes using false discovery rate controlling procedures
A Reiner et al.
BIOINFORMATICS (2003)
PRISM, a generic large scale proteomic investigation strategy for mammals
T Kislinger et al.
MOLECULAR & CELLULAR PROTEOMICS (2003)
Collision-activated infrared multiphoton dissociation in a quadrupole ion trap mass spectrometer
Y Hashimoto et al.
ANALYTICAL CHEMISTRY (2003)
PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry
B Ma et al.
RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2003)
Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry
XJ Li et al.
ANALYTICAL CHEMISTRY (2003)
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
B Boeckmann et al.
NUCLEIC ACIDS RESEARCH (2003)
Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: The yeast proteome
JM Peng et al.
JOURNAL OF PROTEOME RESEARCH (2003)
GoMiner: a resource for biological interpretation of genomic and proteomic data
BR Zeeberg et al.
GENOME BIOLOGY (2003)
Surface-induced dissociation of peptide ions: Kinetics and dynamics
J Laskin et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2003)
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
A Keller et al.
ANALYTICAL CHEMISTRY (2002)
Microcanonical analysis of the kinetic method. The meaning of the apparent entropy
KM Ervin
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2002)
Dissociative capture of hot (3-13 eV) electrons by polypeptide polycations: an efficient process accompanied by secondary fragmentation
F Kjeldsen et al.
CHEMICAL PHYSICS LETTERS (2002)
Evidence base of clinical diagnosis - The architecture of diagnostic research
DL Sackett et al.
BRITISH MEDICAL JOURNAL (2002)
Towards an understanding of the mechanism of electron-capture dissociation: a historical perspective and modern ideas
RA Zubarev et al.
EUROPEAN JOURNAL OF MASS SPECTROMETRY (2002)
Thermal decomposition of a gaseous multiprotein complex studied by blackbody infrared radiative dissociation. Investigating the origin of the asymmetric dissociation behavior
N Felitsyn et al.
ANALYTICAL CHEMISTRY (2001)
Collisions of ions with surfaces at chemically relevant energies: Instrumentation and phenomena
V Grill et al.
REVIEW OF SCIENTIFIC INSTRUMENTS (2001)
Electron detachment dissociation of peptide di-anions: an electron-hole recombination phenomenon
BA Budnik et al.
CHEMICAL PHYSICS LETTERS (2001)
Advantages of external accumulation for electron capture dissociation in Fourier transform mass spectrometry
KF Haselmann et al.
ANALYTICAL CHEMISTRY (2001)
Aligning gene expression time series with time warping algorithms
J Aach et al.
BIOINFORMATICS (2001)
Surface-induced dissociation on a MALDI-ion mobility-orthogonal time-of-flight mass spectrometer: Sequencing peptides from an in-solution protein digest
E Stone et al.
ANALYTICAL CHEMISTRY (2001)
Comparative study of collision-induced and surface-induced dissociation. 2. Fragmentation of small alanine-containing peptides in FT-ICR MS
J Laskin et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2001)
The changing impact of the collision-induced decomposition of ions on mass spectrometry
KR Jennings
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY (2000)
Activated ion electron capture dissociation for mass spectral sequencing of larger (42 kDa) proteins
DM Horn et al.
ANALYTICAL CHEMISTRY (2000)
Electron capture dissociation for structural characterization of multiply charged protein cations
RA Zubarev et al.
ANALYTICAL CHEMISTRY (2000)
Knowledge-based analysis of microarray gene expression data by using support vector machines
MPS Brown et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
分享论文
