4.7 Review

Our microbial selves: what ecology can teach us

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Microbiology

Global patterns in the biogeography of bacterial taxa

Diana R. Nemergut et al.

ENVIRONMENTAL MICROBIOLOGY (2011)

Article Microbiology

The bacterial biogeography of British soils

Robert I. Griffiths et al.

ENVIRONMENTAL MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

Enterotypes of the human gut microbiome

Manimozhiyan Arumugam et al.

NATURE (2011)

Article Multidisciplinary Sciences

Human oral, gut, and plaque microbiota in patients with atherosclerosis

Omry Koren et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

J. Gregory Caporaso et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Vaginal microbiome of reproductive-age women

Jacques Ravel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

Les Dethlefsen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Succession of microbial consortia in the developing infant gut microbiome

Jeremy E. Koenig et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins

Elizabeth E. Hansen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Distinct signatures of diversifying selection revealed by genome analysis of respiratory tract and invasive bacterial populations

Patrick R. Shea et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Microbiota regulates immune defense against respiratory tract influenza A virus infection

Takeshi Ichinohe et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species

Koji Atarashi et al.

SCIENCE (2011)

Review Ecology

Stoichiogenomics: the evolutionary ecology of macromolecular elemental composition

James J. Elser et al.

TRENDS IN ECOLOGY & EVOLUTION (2011)

Article Biotechnology & Applied Microbiology

Moving pictures of the human microbiome

J. Gregory Caporaso et al.

GENOME BIOLOGY (2011)

Review Microbiology

CRISPR/Cas System and Its Role in Phage-Bacteria Interactions

Helene Deveau et al.

ANNUAL REVIEW OF MICROBIOLOGY, VOL 64, 2010 (2010)

Article Biochemistry & Molecular Biology

Reshaping the gut microbiome with bacterial transplantation and antibiotic intake

Chaysavanh Manichanh et al.

GENOME RESEARCH (2010)

Article Ecology

Postprandial remodeling of the gut microbiota in Burmese pythons

Elizabeth K. Costello et al.

ISME JOURNAL (2010)

Review Biotechnology & Applied Microbiology

Linking species concepts to natural product discovery in the post-genomic era

Paul R. Jensen

JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY (2010)

Article Multidisciplinary Sciences

Viruses in the faecal microbiota of monozygotic twins and their mothers

Alejandro Reyes et al.

NATURE (2010)

Article Multidisciplinary Sciences

Gut inflammation provides a respiratory electron acceptor for Salmonella

Sebastian E. Winter et al.

NATURE (2010)

Article Multidisciplinary Sciences

A human gut microbial gene catalogue established by metagenomic sequencing

Junjie Qin et al.

NATURE (2010)

Review Gastroenterology & Hepatology

Probiotics and the gut microbiota in intestinal health and disease

Melanie G. Gareau et al.

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2010)

Review Microbiology

From Structure to Function: the Ecology of Host-Associated Microbial Communities

Courtney J. Robinson et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2010)

Article Multidisciplinary Sciences

Acquisition of Adult-Like TLR4 and TLR9 Responses during the First Year of Life

Muriel Nguyen et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

Forensic identification using skin bacterial communities

Noah Fierer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

Maria G. Dominguez-Bello et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Microbiology

Changes through time: integrating microorganisms into the study of succession

Noah Fierer et al.

RESEARCH IN MICROBIOLOGY (2010)

Article Biotechnology & Applied Microbiology

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

Christian L. Lauber et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Review Biochemistry & Molecular Biology

Viruses and prophages in aquatic ecosystems

Telesphore Sime-Ngando et al.

CANADIAN JOURNAL OF MICROBIOLOGY (2009)

Article Microbiology

The seasonal structure of microbial communities in the Western English Channel

Jack A. Gilbert et al.

ENVIRONMENTAL MICROBIOLOGY (2009)

Article Agriculture, Dairy & Animal Science

Neonatal protection by an innate immune system of human milk consisting of oligosaccharides and glycans

D. S. Newburg

JOURNAL OF ANIMAL SCIENCE (2009)

Article Multidisciplinary Sciences

A core gut microbiome in obese and lean twins

Peter J. Turnbaugh et al.

NATURE (2009)

Review Microbiology

ESSAY What are the consequences of the disappearing human microbiota?

Martin J. Blaser et al.

NATURE REVIEWS MICROBIOLOGY (2009)

Review Medicine, Research & Experimental

Vaginal and oral microbes, host genotype and preterm birth

Usha Srinivasan et al.

MEDICAL HYPOTHESES (2009)

Article Multidisciplinary Sciences

Human gut microbiome adopts an alternative state following small bowel transplantation

Amber L. Hartman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Regulation of myocardial ketone body metabolism by the gut microbiota during nutrient deprivation

Peter A. Crawford et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Topographical and Temporal Diversity of the Human Skin Microbiome

Elizabeth A. Grice et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

Bacterial Community Variation in Human Body Habitats Across Space and Time

Elizabeth K. Costello et al.

SCIENCE (2009)

Article Cell Biology

The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice

Peter J. Turnbaugh et al.

SCIENCE TRANSLATIONAL MEDICINE (2009)

Article Limnology

Typhoons initiate predictable change in aquatic bacterial communities

Stuart E. Jones et al.

LIMNOLOGY AND OCEANOGRAPHY (2008)

Article Multidisciplinary Sciences

Functional metagenomic profiling of nine biomes

Elizabeth A. Dinsdale et al.

NATURE (2008)

Review Microbiology

Worlds within worlds: evolution of the vertebrate gut microbiota

Ruth E. Ley et al.

NATURE REVIEWS MICROBIOLOGY (2008)

Article Multidisciplinary Sciences

Resistance, resilience, and redundancy in microbial communities

Steven D. Allison et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Microbiology

Viral diversity and dynamics in an infant gut

Mya Breitbart et al.

RESEARCH IN MICROBIOLOGY (2008)

Article Multidisciplinary Sciences

The power of species sorting: Local factors drive bacterial community composition over a wide range of spatial scales

Katleen Van der Gucht et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Multidisciplinary Sciences

An ecological and evolutionary perspective on human-microbe mutualism and disease

Les Dethlefsen et al.

NATURE (2007)

Article Multidisciplinary Sciences

The Human Microbiome Project

Peter J. Turnbaugh et al.

NATURE (2007)

Review Microbiology

The nineteenth century roots of 'everything is everywhere'

Maureen A. O'Malley

NATURE REVIEWS MICROBIOLOGY (2007)

Review Multidisciplinary Sciences

Stability and diversity of ecosystems

Anthony R. Ives et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

Development of the human infant intestinal microbiota

Chana Palmer et al.

PLOS BIOLOGY (2007)

Article Ecology

A comparison of taxon co-occurrence patterns for macro- and microorganisms

M. Claire Horner-Devine et al.

ECOLOGY (2007)

Article Multidisciplinary Sciences

Grassland species loss resulting from reduced niche dimension

W. Stanley Harpole et al.

NATURE (2007)

Article Limnology

Interannual dynamics and phenology of bacterial communities in a eutrophic lake

Ashley Shade et al.

LIMNOLOGY AND OCEANOGRAPHY (2007)

Article Biochemistry & Molecular Biology

The marine viromes of four oceanic regions

Florent E. Angly et al.

PLOS BIOLOGY (2006)

Article Multidisciplinary Sciences

Phosphate acquisition genes in Prochlorococcus ecotypes:: Evidence for genome-wide adaptation

Adam C. Martiny et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Ecology

Taxa-area relationships for microbes: the unsampled and the unseen

Stephen Woodcock et al.

ECOLOGY LETTERS (2006)

Article Multidisciplinary Sciences

The diversity and biogeography of soil bacterial communities

N Fierer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

Diversity of the human intestinal microbial flora

PB Eckburg et al.

SCIENCE (2005)

Review Biochemistry & Molecular Biology

The potential role of endogenous bacteriophages in controlling invading pathogens

A Górski et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2005)

Article Multidisciplinary Sciences

A taxa-area relationship for bacteria

MC Horner-Devine et al.

NATURE (2004)

Review Microbiology

New approaches to analyzing microbial biodiversity data

BJM Bohannan et al.

CURRENT OPINION IN MICROBIOLOGY (2003)

Article Multidisciplinary Sciences

Introduced species and their missing parasites

ME Torchin et al.

NATURE (2003)

Review Microbiology

Biofilms: Survival mechanisms of clinically relevant microorganisms

RM Donlan et al.

CLINICAL MICROBIOLOGY REVIEWS (2002)

Article Multidisciplinary Sciences

Species diversity enhances ecosystem functioning through interspecific facilitation

BJ Cardinale et al.

NATURE (2002)

Article Biotechnology & Applied Microbiology

Molecular monitoring of succession of bacterial communities in human neonates

CF Favier et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)

Review Ecology

Progress in invasion biology: predicting invaders

CS Kolar et al.

TRENDS IN ECOLOGY & EVOLUTION (2001)

Article Biotechnology & Applied Microbiology

Flexible community structure correlates with stable community function in methanogenic bioreactor communities perturbed by glucose

AS Fernandez et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)

Article Soil Science

In search of biological indicators for soil health and disease suppression

AHC van Bruggen et al.

APPLIED SOIL ECOLOGY (2000)

Review Multidisciplinary Sciences

The diversity-stability debate

KS McCann

NATURE (2000)

Review Multidisciplinary Sciences

Consequences of changing biodiversity

FS Chapin et al.

NATURE (2000)

Article Biotechnology & Applied Microbiology

Parallel processing of substrate correlates with greater functional stability in methanogenic bioreactor communities perturbed by glucose

SA Hashsham et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)