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Lukas Burger et al.
MOLECULAR SYSTEMS BIOLOGY (2008)
Learning how to live together: genomic insights into prokaryote-animal symbioses
Andres Moya et al.
NATURE REVIEWS GENETICS (2008)
High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
David Juan et al.
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Detecting coevolution in and among protein domains
Chen-Hsiang Yeang et al.
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Juan A. G. Ranea et al.
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Predicting protein domain interactions from coevolution of conserved regions
Maricel G. Kann et al.
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BMC BIOINFORMATICS (2007)
Specificity in protein interactions and its relationship with sequence diversity and coevolution
Luke Hakes et al.
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Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners
Benjamin A. Shoemaker et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
Phylogenetic methodology for detecting protein interactions
Peter J. Waddell et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
Roger A. Craig et al.
BMC BIOINFORMATICS (2007)
Characterization of compensated mutations in terms of structural and physico-chemical properties
Carles Ferrer-Costa et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
Constrained models of evolution lead to improved prediction of functional linkage from correlated gain and loss of genes
Daniel Barker et al.
BIOINFORMATICS (2007)
Testing for covarion-like evolution in protein sequences
Huai-Chun Wang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Contact prediction using mutual information and neural nets
George Shackelford et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
An improved method for identifying functionally linked proteins using phylogenetic profiles
Shawn Cokus et al.
BMC BIOINFORMATICS (2007)
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions
Tetsuya Sato et al.
BIOINFORMATICS (2006)
Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions
Raja Jothi et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
The coordinated evolution of yeast proteins is constrained by functional modularity
Yiwen Chen et al.
TRENDS IN GENETICS (2006)
TSEMA: interactive prediction of protein pairings between interacting families
Jose M. G. Izarzugaza et al.
NUCLEIC ACIDS RESEARCH (2006)
Inferring functional linkages between proteins from evolutionary scenarios
Yun Zhou et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Codep: Maximizing co-evolutionary interdependencies to discover interacting proteins
Elisabeth R. M. Tillier et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Correlated mutations: Advances and limitations. A study on fusion proteins and on the cohesin-dockerin families
Inbal Halperin et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
LA Sazanov et al.
SCIENCE (2006)
A single determinant dominates the rate of yeast protein evolution
DA Drummond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Co-evolutionary analysis of insulin/insulin like growth factor 1 signal pathway in vertebrate species
TH Dou et al.
FRONTIERS IN BIOSCIENCE-LANDMARK (2006)
Robust signals of coevolution of interacting residues in mammalian proteomes identified by phylogeny-aided structural analysis
SS Choi et al.
NATURE GENETICS (2005)
Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome
F Pazos et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
Evolutionary information for specifying a protein fold
M Socolich et al.
NATURE (2005)
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships
T Sato et al.
BIOINFORMATICS (2005)
Refined phylogenetic profiles method for predicting protein-protein interactions
JC Sun et al.
BIOINFORMATICS (2005)
Structure, function, and evolution of transient and obligate protein-protein interactions
J Mintseris et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Scoring docking models with evolutionary information
M Tress et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Improving the precision of the structure-function relationship by considering phylogenetic context
BE Shakhnovich
PLOS COMPUTATIONAL BIOLOGY (2005)
Predicting protein-protein interaction by searching evolutionary tree automorphism space
R Jothi et al.
BIOINFORMATICS (2005)
Electrostatic repulsion, compensatory mutations, and long-range non-additive effects at the dimerization interface of the HIV capsid protein
M del Alamo et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
Large-scale co-evolution analysis of protein structural interlogues using the global protein structural interactome map (PSIMAP)
WK Kim et al.
BIOINFORMATICS (2004)
Network biology:: Understanding the cell's functional organization
AL Barabási et al.
NATURE REVIEWS GENETICS (2004)
Using quaternary structures to assess the evolutionary history of proteins: The case of the aspartate carbamoyltransferase
B Labedan et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome
S Subramanian et al.
GENETICS (2004)
Use of logic relationships to decipher protein network organization
PM Bowers et al.
SCIENCE (2004)
Influence of conservation on calculations of amino acid covariance in multiple sequence alignments
AA Fodor et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
A domain interaction map based on phylogenetic profiling
P Pagel et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
ADVICE: Automated detection and validation of interaction by co-evolution
SH Tan et al.
NUCLEIC ACIDS RESEARCH (2004)
Compensated deleterious mutations in insect genomes
RJ Kulathinal et al.
SCIENCE (2004)
Coevolution of gene expression among interacting proteins
HB Fraser et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Analyzing cellular biochemistry in terms of molecular networks
Y Xia et al.
ANNUAL REVIEW OF BIOCHEMISTRY (2004)
Prolinks: a database of protein functional linkages derived from coevolution
PM Bowers et al.
GENOME BIOLOGY (2004)
Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages
SV Date et al.
NATURE BIOTECHNOLOGY (2003)
Systematic discovery of analogous enzymes in thiamin biosynthesis
E Morett et al.
NATURE BIOTECHNOLOGY (2003)
Exploiting the co-evolution of interacting proteins to discover interaction specificity
AK Ramani et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Inferring protein interactions from phylogenetic distance matrices
J Gertz et al.
BIOINFORMATICS (2003)
STRING: a database of predicted functional associations between proteins
C von Mering et al.
NUCLEIC ACIDS RESEARCH (2003)
Molecular phylogeny and evolution of the plant-specific seven-transmembrane MLO family
A Devoto et al.
JOURNAL OF MOLECULAR EVOLUTION (2003)
Rapid coevolution of the nematode sex-determining genes fem-3 and tra-2
ES Haag et al.
CURRENT BIOLOGY (2002)
Co-evolutionary analysis reveals insights into protein-protein interactions
CS Goh et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Dobzhansky-Muller incompatibilities in protein evolution
AS Kondrashov et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Testing for differences in rates-across-sites distributions in phylogenetic subtrees
E Susko et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
Computational methods for the prediction of protein interactions
A Valencia et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2002)
In silico two-hybrid system for the selection of physically interacting protein pairs
F Pazos et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2002)
Evolutionary rate in the protein interaction network
HB Fraser et al.
SCIENCE (2002)
Allele-specific receptor-ligand interactions in Brassica self-incompatibility
A Kachroo et al.
SCIENCE (2001)
Similarity of phylogenetic trees as indicator of protein-protein interaction
F Pazos et al.
PROTEIN ENGINEERING (2001)
Episodic evolution of growth hormone in primates and emergence of the species specificity of human growth hormone receptor
JC Liu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2001)
The TRA-1 transcription factor binds TRA-2 to regulate sexual fates in Caenorhabditis elegans
SP Wang et al.
EMBO JOURNAL (2001)
Co-evolution of proteins with their interaction partners
CS Goh et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Highly divergent sequences of the pollen self-incompatibility (S) gene in class-I S haplotypes of Brassica campestris (syn. rapa) L.
M Watanabe et al.
FEBS LETTERS (2000)
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