4.5 Review

PhosphoproteomicsMore than meets the eye

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P-N bond protein phosphatases

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D-score: A search engine independent MD-score

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TiSH - a robust and sensitive global phosphoproteomics strategy employing a combination of TiO2, SIMAC, and HILIC

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Comparison of Three Quantitative Phosphoproteomic Strategies to Study Receptor Tyrosine Kinase Signaling

Guoan Zhang et al.

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Mass Spectrometry Detection of Histidine Phosphorylation on NM23-H1

John D. Lapek et al.

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Universal and Confident Phosphorylation Site Localization Using phosphoRS

Thomas Taus et al.

JOURNAL OF PROTEOME RESEARCH (2011)

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Comparison of ERLIC-TiO2, HILIC-TiO2, and SCX-TiO2 for Global Phosphoproteomics Approaches

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Improved Peptide Identification by Targeted Fragmentation Using CID, HCD and ETD on an LTQ-Orbitrap Velos

Christian K. Frese et al.

JOURNAL OF PROTEOME RESEARCH (2011)

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Confident Phosphorylation Site Localization Using the Mascot Delta Score

Mikhail M. Savitski et al.

MOLECULAR & CELLULAR PROTEOMICS (2011)

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Online Nanoflow Multidimensional Fractionation for High Efficiency Phosphopeptide Analysis

Scott B. Ficarro et al.

MOLECULAR & CELLULAR PROTEOMICS (2011)

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Catch me if you can: Mass spectrometry-based phosphoproteomics and quantification strategies

Beate Eyrich et al.

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The good, the bad, the ugly: Validating the mass spectrometric analysis of modified peptides

Florian Beck et al.

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iTRAQ protein quantification: A quality-controlled workflow

Julia M. Burkhart et al.

PROTEOMICS (2011)

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The Physiological Relevance of Protein Phosphatase 1 and its Interacting Proteins to Health and Disease

M. Fardilha et al.

CURRENT MEDICINAL CHEMISTRY (2010)

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Characterization of O-Phosphohydroxyproline in Rat α-Crystallin A

Axel Kuehlberg et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

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Development of Stable Phosphohistidine Analogues

Jung-Min Kee et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)

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The Generating Function of CID, ETD, and CID/ETD Pairs of Tandem Mass Spectra: Applications to Database Search

Sangtae Kim et al.

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Lys-N and Trypsin Cover Complementary Parts of the Phosphoproteome in a Refined SCX-Based Approach

Sharon Gauci et al.

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Phosphopeptide fragmentation and analysis by mass spectrometry

Paul J. Boersema et al.

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Citrate Boosts the Performance of Phosphopeptide Analysis by UPLC-ESI-MS/MS

Dominic Winter et al.

JOURNAL OF PROTEOME RESEARCH (2009)

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Detection and analysis of protein histidine phosphorylation

Paul G. Besant et al.

MOLECULAR AND CELLULAR BIOCHEMISTRY (2009)

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Receptor tyrosine kinase signaling: a view from quantitative proteomics

Joern Dengjel et al.

MOLECULAR BIOSYSTEMS (2009)

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Universal sample preparation method for proteome analysis

Jacek R. Wisniewski et al.

NATURE METHODS (2009)

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Decision tree-driven tandem mass spectrometry for shotgun proteomics

Danielle L. Swaney et al.

NATURE METHODS (2008)

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Quantitative proteomic analysis of protein complexes

Delphine Pflieger et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

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Global profiling of phosphopeptides by titania affinity enrichment

Jiang Wu et al.

JOURNAL OF PROTEOME RESEARCH (2007)

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Performance characteristics of electron transfer dissociation mass spectrometry

David M. Good et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Chemistry, Analytical

Analysis of histidine phosphorylation using tandem MS and ion - Electron reactions

Anne J. Kleinnijenhuis et al.

ANALYTICAL CHEMISTRY (2007)

Article Biotechnology & Applied Microbiology

Quantitative proteomic assessment of very early cellular signaling events

Joern Dengjel et al.

NATURE BIOTECHNOLOGY (2007)

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Reproducible isolation of distinct, overlapping segments of the phosphoproteome

Bernd Bodenmiller et al.

NATURE METHODS (2007)

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Large-scale phosphorylation analysis of mouse liver

Judit Villen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Biochemistry & Molecular Biology

Focus on phosphohistidine

P. V. Attwood et al.

AMINO ACIDS (2007)

Article Biochemistry & Molecular Biology

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

Jesper V. Olsen et al.

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A probability-based approach for high-throughput protein phosphorylation analysis and site localization

Sean A. Beausoleil et al.

NATURE BIOTECHNOLOGY (2006)

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Highly selective enrichment of phosphorylated peptides using titanium dioxide

Tine E. Thingholm et al.

NATURE PROTOCOLS (2006)

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Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns

MR Larsen et al.

MOLECULAR & CELLULAR PROTEOMICS (2005)

Article Biochemical Research Methods

Sample preparation and digestion for proteomic analyses using spin filters

LL Manza et al.

PROTEOMICS (2005)

Article Biotechnology & Applied Microbiology

Immunoaffinity profiling of tyrosine phosphorylation in cancer cells

J Rush et al.

NATURE BIOTECHNOLOGY (2005)

Article Biochemical Research Methods

An isotope labeling strategy for quantifying the degree of phosphorylation at multiple sites in proteins

AD Hegeman et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2004)

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Chemo-affinity of titania for the column-switching HPLC analysis of phosphopeptides

A Sano et al.

ANALYTICAL SCIENCES (2004)

Article Chemistry, Analytical

Phosphopeptide-selective column-switching RP-HPLC with a titania precolumn

I Kuroda et al.

ANALYTICAL SCIENCES (2004)

Article Multidisciplinary Sciences

Large-scale characterization of HeLa cell nuclear phosphoproteins

SA Beausoleil et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Multidisciplinary Sciences

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

SA Gerber et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

Identification and characterization of a mammalian 14-kDa phosphohistidine phosphatase

P Ek et al.

EUROPEAN JOURNAL OF BIOCHEMISTRY (2002)

Article Biotechnology & Applied Microbiology

Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

SB Ficarro et al.

NATURE BIOTECHNOLOGY (2002)

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Histidine to aspartate phosphotransferase activity of nm23 proteins: phosphorylation of aldolase C on Asp-319

PD Wagner et al.

BIOCHEMICAL JOURNAL (2000)

Article Biochemistry & Molecular Biology

Detection of a mammalian histone H4 kinase that has yeast histidine kinase-like enzymic activity

PG Besant et al.

INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2000)