期刊
CLINICAL INFECTIOUS DISEASES
卷 60, 期 3, 页码 369-377出版社
OXFORD UNIV PRESS INC
DOI: 10.1093/cid/ciu812
关键词
MERS-coronavirus; outbreak; nosocomial transmission; virus isolation; transmission infection control
资金
- European Commission [223498]
- ANTIGONE [278976]
- German Research Council [01KIO701, DR 772/3-1]
- European Commission
- Ministry of Research (Germany)
- University College London Hospitals National Health Service Foundation Trust
- National Institute of Health Research, Biomedical Research Centre, University College London Hospitals
- European & Developing Countries Clinical Trials Partnership
- European Commission Project RiD-RTI
- European Commission under the project PREDEMICS [278433]
Background. In spring 2014, a sudden rise in the number of notified Middle East respiratory syndrome coronavirus (MERS-CoV) infections occurred across Saudi Arabia with a focus in Jeddah. Hypotheses to explain the outbreak pattern include increased surveillance, increased zoonotic transmission, nosocomial transmission, and changes in viral transmissibility, as well as diagnostic laboratory artifacts. Methods. Diagnostic results from Jeddah Regional Laboratory were analyzed. Viruses from the Jeddah outbreak and viruses occurring during the same time in Riyadh, Al-Kharj, and Madinah were fully or partially sequenced. A set of 4 single-nucleotide polymorphisms distinctive to the Jeddah outbreak were determined from additional viruses. Viruses from Riyadh and Jeddah were isolated and studied in cell culture. Results. Up to 481 samples were received per day for reverse transcription polymerase chain reaction (RT-PCR) testing. A laboratory proficiency assessment suggested positive and negative results to be reliable. Forty-nine percent of 168 positive-testing samples during the Jeddah outbreak stemmed from King Fahd Hospital. All viruses from Jeddah were monophyletic and similar, whereas viruses from Riyadh were paraphyletic and diverse. A hospital-associated transmission cluster, to which cases in Indiana (United States) and the Netherlands belonged, was discovered in Riyadh. One Jeddah-type virus was found in Riyadh, with matching travel history to Jeddah. Virus isolates representing outbreaks in Jeddah and Riyadh were not different from MERS-CoV EMC/2012 in replication, escape of interferon response, or serum neutralization. Conclusions. Virus shedding and virus functions did not change significantly during the outbreak in Jeddah. These results suggest the outbreaks to have been caused by biologically unchanged viruses in connection with nosocomial transmission.
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