4.1 Review

Epigenetic landscape for initiation of DNA replication

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biochemistry & Molecular Biology

Regulation of DNA replication timing

T. D. Kolesnikova

MOLECULAR BIOLOGY (2013)

Article Cell Biology

DNA Replication Timing

Nicholas Rhind et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Forkhead Transcription Factors Establish Origin Timing and Long-Range Clustering in S. cerevisiae

Simon R. V. Knott et al.

Article Cell Biology

New insights into replication origin characteristics in metazoans

Christelle Cayrou et al.

CELL CYCLE (2012)

Article Cell Biology

The role of PR-Set7 in replication licensing depends on Suv4-20h

David B. Beck et al.

GENES & DEVELOPMENT (2012)

Article Biochemistry & Molecular Biology

Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs

Emilie Besnard et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)

Article Biochemistry & Molecular Biology

The epigenetic control of E-box and Myc-dependent chromatin modifications regulate the licensing of lamin B2 origin during cell cycle

Manickavinayaham Swarnalatha et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana

Hume Stroud et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Chromatin signatures of the Drosophila replication program

Matthew L. Eaton et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

Genome-wide depletion of replication initiation events in highly transcribed regions

Melvenia M. Martin et al.

GENOME RESEARCH (2011)

Article Cell Biology

Cdc6 expression represses E-cadherin transcription and activates adjacent replication origins

Maria Sideridou et al.

JOURNAL OF CELL BIOLOGY (2011)

Article Multidisciplinary Sciences

Cdc45 Limits Replicon Usage from a Low Density of preRCs in Mammalian Cells

Philip G. Wong et al.

PLOS ONE (2011)

Article Biochemical Research Methods

Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome

Guillaume Guilbaud et al.

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Why are we where we are? Understanding replication origins and initiation sites in eukaryotes using ChIP-approaches

Aloys Schepers et al.

CHROMOSOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Mathematical modelling of eukaryotic DNA replication

Olivier Hyrien et al.

CHROMOSOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Domain-wide regulation of DNA replication timing during mammalian development

Benjamin D. Pope et al.

CHROMOSOME RESEARCH (2010)

Article Biophysics

Lambda exonuclease digestion of CGG trinucleotide repeats

R. S. Conroy et al.

EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS (2010)

Article Cell Biology

Cohesin organizes chromatin loops at DNA replication factories

Emmanuelle Guillou et al.

GENES & DEVELOPMENT (2010)

Article Cell Biology

Conserved nucleosome positioning defines replication origins

Matthew L. Eaton et al.

GENES & DEVELOPMENT (2010)

Article Biochemistry & Molecular Biology

Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis

Ichiro Hiratani et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading

Heather K. MacAlpine et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Heterochromatin protein 1 (HP1) modulates replication timing of the Drosophila genome

Michaela Schwaiger et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Sequence features that drive human promoter function and tissue specificity

Jane M. Landolin et al.

GENOME RESEARCH (2010)

Article Cell Biology

G2 phase chromatin lacks determinants of replication timing

Junjie Lu et al.

JOURNAL OF CELL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide

Rashi Halder et al.

MOLECULAR BIOSYSTEMS (2010)

Article Biochemistry & Molecular Biology

HBO1 Histone Acetylase Activity Is Essential for DNA Replication Licensing and Inhibited by Geminin

Benoit Miotto et al.

MOLECULAR CELL (2010)

Article Biochemistry & Molecular Biology

A WD-Repeat Protein Stabilizes ORC Binding to Chromatin

Zhen Shen et al.

MOLECULAR CELL (2010)

Review Genetics & Heredity

Evaluating genome-scale approaches to eukaryotic DNA replication

David M. Gilbert

NATURE REVIEWS GENETICS (2010)

Article Biochemistry & Molecular Biology

Homeotic proteins participate in the function of human-DNA replication origins

Laura Marchetti et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

R. Scott Hansen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Human origin recognition complex is essential for HP1 binding to chromatin and heterochromatin organization

Supriya G. Prasanth et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Genome-Wide Kinetics of Nucleosome Turnover Determined by Metabolic Labeling of Histones

Roger B. Deal et al.

SCIENCE (2010)

Article Cell Biology

Functional cooperation between FACT and MCM is coordinated with cell cycle and differential complex formation

Bertrand Chin-Ming Tan et al.

JOURNAL OF BIOMEDICAL SCIENCE (2010)

Article Biochemistry & Molecular Biology

The impact of nucleosome positioning on the organization of replication origins in eukaryotes

Shanye Yin et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2009)

Article Cell Biology

Gene expression profiles of human inner cell mass cells and embryonic stem cells

Renee A. Reijo Pera et al.

DIFFERENTIATION (2009)

Review Biochemistry & Molecular Biology

Replication timing as an epigenetic mark

Ichiro Hiratani et al.

EPIGENETICS (2009)

Article Cell Biology

Decreased replication origin activity in temporal transition regions

Zeqiang Guan et al.

JOURNAL OF CELL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

HOXD13 Binds DNA Replication Origins To Promote Origin Licensing and Is Inhibited by Geminin

Valentina Salsi et al.

MOLECULAR AND CELLULAR BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Monomethylation of Histone H4-Lysine 20 Is Involved in Chromosome Structure and Stability and Is Essential for Mouse Development

Hisanobu Oda et al.

MOLECULAR AND CELLULAR BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Genome-wide analysis predicts DNA structural motifs as nucleosome exclusion signals

Kangkan Halder et al.

MOLECULAR BIOSYSTEMS (2009)

Article Biochemistry & Molecular Biology

Selection for the G4 DNA Motif at the 5′ End of Human Genes

Johanna Eddy et al.

MOLECULAR CARCINOGENESIS (2009)

Article Multidisciplinary Sciences

Cyclin A-Cdk1 regulates the origin firing program in mammalian cells

Yuko Katsuno et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

Erez Lieberman-Aiden et al.

SCIENCE (2009)

Article Genetics & Heredity

Transcription Initiation Activity Sets Replication Origin Efficiency in Mammalian Cells

Joana Sequeira-Mendes et al.

PLOS GENETICS (2009)

Article Biochemistry & Molecular Biology

Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci

Steven J. Petesch et al.

Article Cell Biology

HBO1 histone acetylase is a coactivator of the replication licensing factor Cdt1

Benoit Miotto et al.

GENES & DEVELOPMENT (2008)

Article Biochemistry & Molecular Biology

Global organization of replication time zones of the mouse genome

Shlomit Farkash-Amar et al.

GENOME RESEARCH (2008)

Article Biochemistry & Molecular Biology

DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI

Daniel M. Czajkowsky et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Article Biochemistry & Molecular Biology

In Xenopus egg extracts, DNA replication initiates preferentially at or near asymmetric AT sequences

Slavica Stanojcic et al.

MOLECULAR AND CELLULAR BIOLOGY (2008)

Article Biochemistry & Molecular Biology

An ARS element inhibits DNA replication through a SIR2-Dependent mechanism

Amber Crampton et al.

MOLECULAR CELL (2008)

Article Multidisciplinary Sciences

Replication fork movement sets chromatin loop size and origin choice in mammalian cells

Sylvain Courbet et al.

NATURE (2008)

Article Multidisciplinary Sciences

A Dynamic Stochastic Model for DNA Replication Initiation in Early Embryos

Arach Goldar et al.

PLOS ONE (2008)

Article Multidisciplinary Sciences

Genome-wide studies highlight indirect links between human replication origins and gene regulation

Jean-Charles Cadoret et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Excess MCM proteins protect human cells from replicative stress by licensing backup origins of replication

Arkaitz Ibarra et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Interaction between HMGA1a and the origin recognition complex creates site-specific replication origins

Andreas W. Thomae et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

Global Reorganization of Replication Domains During Embryonic Stem Cell Differentiation

Ichiro Hiratani et al.

PLOS BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Certain and progressive methylation of histone H4 at lysine 20 during the cell cycle

James J. Pesavento et al.

MOLECULAR AND CELLULAR BIOLOGY (2008)

Article Multidisciplinary Sciences

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

Tarjei S. Mikkelsen et al.

NATURE (2007)

Article Multidisciplinary Sciences

Non-transcriptional control of DNA replication by c-Myc

David Dominguez-Sola et al.

NATURE (2007)

Article Biochemistry & Molecular Biology

A chromatin landmark and transcription initiation at most promoters in human cells

Matthew G. Guenther et al.

Article Pathology

Mapping of an origin of DNA replication in the promoter of fragile X gene FMR1

Bruna P. Brylawski et al.

EXPERIMENTAL AND MOLECULAR PATHOLOGY (2007)

Article Cell Biology

DNA replication timing: random thoughts about origin firing

Nicholas Rhind

NATURE CELL BIOLOGY (2006)

Article Cell Biology

DNA replication origin interference increases the spacing between initiation events in human cells

Ronald Lebofsky et al.

MOLECULAR BIOLOGY OF THE CELL (2006)

Article Biochemistry & Molecular Biology

Functional cooperation between FACT and MCM helicase facilitates initiation of chromatin DNA replication

Bertrand Chin-Ming Tan et al.

EMBO JOURNAL (2006)

Review Biochemistry & Molecular Biology

de FACTo nucleosome dynamics

Danny Reinberg et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Biochemistry & Molecular Biology

Mapping of DNA replication origins to noncoding genes of the X-inactivation center

Rebecca K. Rowntree et al.

MOLECULAR AND CELLULAR BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Regulation of replication licensing by acetyltransferase Hbo1

M Iizuka et al.

MOLECULAR AND CELLULAR BIOLOGY (2006)

Article Multidisciplinary Sciences

A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

S Saxonov et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Cell Biology

DNA replication origins fire stochastically in fission yeast

PK Patel et al.

MOLECULAR BIOLOGY OF THE CELL (2006)

Article Biochemistry & Molecular Biology

Mitotic remodeling of the replicon and chromosome structure

JM Lemaitre et al.

Review Cell Biology

Transcriptional regulation and transformation by MYC proteins

S Adhikary et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)

Article Cell Biology

Geminin regulates neuronal differentiation by antagonizing Brg1 activity

S Seo et al.

GENES & DEVELOPMENT (2005)

Article Biochemistry & Molecular Biology

Cell cycle regulation of chromatin at an origin of DNA replication

J Zhou et al.

EMBO JOURNAL (2005)

Article Biochemistry & Molecular Biology

Prevalence of quadruplexes in the human genome

JL Huppert et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Modular structure of the human lamin B2 replicator

S Paixao et al.

MOLECULAR AND CELLULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Visualization of individual DNA loops and a map of loop domains in the human dystrophin gene

OV Iarovaia et al.

NUCLEIC ACIDS RESEARCH (2004)

Review Biochemistry & Molecular Biology

The activities of eukaryotic replication origins in chromatin

M Weinreich et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION (2004)

Article Multidisciplinary Sciences

Direct interaction of geminin and Six3 in eye development

F Del Bene et al.

NATURE (2004)

Article Biochemistry & Molecular Biology

An episomal mammalian replicon: sequence-independent binding of the origin recognition complex

D Schaarschmidt et al.

EMBO JOURNAL (2004)

Article Multidisciplinary Sciences

Nuclear scaffold/matrix attached region modules linked to a transcription unit are sufficient for replication and maintenance of a mammalian episome

ACW Jenke et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Multidisciplinary Sciences

DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states

EJ White et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Cell Biology

Specification of a DNA replication origin by a transcription complex

E Danis et al.

NATURE CELL BIOLOGY (2004)

Article Multidisciplinary Sciences

Chromatin regulates origin activity in Drosophila follicle cells

BD Aggarwal et al.

NATURE (2004)

Article Biochemistry & Molecular Biology

Transcription factor binding and induced transcription alter chromosomal c-myc replicator activity

M Ghosh et al.

MOLECULAR AND CELLULAR BIOLOGY (2004)

Article Multidisciplinary Sciences

Heterochromatin on the inactive X chromosome delays replication timing without affecting origin usage

M Gómez et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biotechnology & Applied Microbiology

Prediction of Saccharomyces cerevisiae replication origins

AM Breier et al.

GENOME BIOLOGY (2004)

Article Multidisciplinary Sciences

Sequence-dependent pausing of single lambda exonuclease molecules

TT Perkins et al.

SCIENCE (2003)

Article Biochemistry & Molecular Biology

Same origins of DNA replication function on the active and inactive human X chromosomes

SM Cohen et al.

JOURNAL OF CELLULAR BIOCHEMISTRY (2003)

Article Biochemistry & Molecular Biology

Developmental changes in the Sciara II/9A initiation zone for DNA replication

VV Lunyak et al.

MOLECULAR AND CELLULAR BIOLOGY (2002)

Article Biochemistry & Molecular Biology

The origin recognition complex marks a replication origin in the human TOP1 gene promoter

C Keller et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2002)

Article Biochemistry & Molecular Biology

Replication factors MCM2 and ORC1 interact with the histone acetyltransferase HBO1

TW Burke et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2001)

Article Biochemistry & Molecular Biology

Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci

R Berezney et al.

CHROMOSOMA (2000)