期刊
NUCLEIC ACIDS RESEARCH
卷 29, 期 1, 页码 219-220出版社
OXFORD UNIV PRESS
DOI: 10.1093/nar/29.1.219
关键词
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PDB-REPRDB is a database of representative protein chains from the Protein Data Bank (PDB). The previous version of PDB-REPRDB provided 48 representative sets, whose similarity criteria were predetermined, on the WWW. The current version is designed so that the user may obtain a quick selection of representative chains from PDB, The selection of representative chains can be dynamically configured according to the user's requirement, The WWW interface provides a large degree of freedom in setting parameters, such as cut-off scores of sequence and structural similarity, One can obtain a representative list and classification data of protein chains from the system, The current database includes 20 457 protein chains from PDB entries (August 6, 2000). The system for PDB-REPRDB is available at the Parallel Protein Information Analysis system (PAPIA) WWW server (http://www.rwcp.or.jp/ papia/).
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