期刊
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
卷 61, 期 -, 页码 143-151出版社
WILEY
DOI: 10.1002/prot.20731
关键词
protein structure prediction; CASP; protein sequence analysis; bioinformatics
资金
- Wellcome Trust Funding Source: Medline
A number of new and newly improved methods for predicting protein structure developed by the Jones-University College London group were used to make predictions for the CASP6 experiment. Structures were predicted with a combination of fold recognition methods (mGenTHREADER, nFOLD, and THREADER) and a substantially enhanced version of FRAGFOLD, our fragment assembly method. Attempts at automatic domain parsing were made using DomPred and DomSSEA, which are based on a secondary structure parsing algorithm and additionally for DomPred, a simple local sequence alignment scoring function. Disorder prediction was carried out using a new SVM-based version of DISOPRED. Attempts were also made at domain docking and microdomain folding in order to build complete chain models for some targets.
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