4.7 Article

A short proof that phylogenetic tree reconstruction by maximum likelihood is hard

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IEEE COMPUTER SOC
DOI: 10.1109/TCBB.2006.4

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analysis of algorithms and problem complexity; probability and statistics; biology and genetics

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Maximum likelihood is one of the most widely used techniques to infer evolutionary histories. Although it is thought to be intractable, a proof of its hardness has been lacking. Here, we give a short proof that computing the maximum likelihood tree is NP-hard by exploiting a connection between likelihood and parsimony observed by Tuffley and Steel.

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