The peroxisome proliferator-activated receptor N-terminal domain controls isotype-selective gene expression and adipogenesis

Peroxisome proliferator-activated receptors (PPAR gamma, PPAR gamma, and PPAR gamma) are important regulators of lipid metabolism. Although they share significant structural similarity, the biological effects associated with each PPAR isotype are distinct. For example, PPAR alpha and PPAR delta regulate fatty acid catabolism, whereas PPAR gamma controls lipid storage and adipogenesis. The different functions of PPARs in vivo can be explained at least in part by the different tissue distributions of the three receptors. The question of whether the receptors have different intrinsic activities and regulate distinct target genes, however, has not been adequately explored. We have engineered cell lines that express comparable amounts of each receptor. Transcriptional profiling of these cells in the presence of selective agonists reveals partially overlapping but distinct patterns of gene regulation by the three PPARs. Moreover, analysis of chimeric receptors points to the N terminus of each receptor as the key determinant of isotype-selective gene expression. For example, the N terminus of PPAR gamma confers the ability to promote adipocyte differentiation when fused to the PPAR delta DNA binding domain and ligand binding domain, whereas the N terminus of PPAR delta leads to the inappropriate expression of fatty acid oxidation genes in differentiated adipocytes when fused to PPAR gamma. Finally, we demonstrate that the N terminus of each receptor functions in part to limit receptor activity because deletion of the N terminus leads to nonselective activation of target genes. A more detailed understanding of the mechanisms by which the individual PPARs differentially regulate gene expression should aid in the design of more effective drugs, including tissue-and target gene- selective PPAR modulators.