相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。CpGIMethPred: computational model for predicting methylation status of CpG islands in human genome
Hao Zheng et al.
BMC MEDICAL GENOMICS (2013)
Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation
Pengfei Yu et al.
GENOME RESEARCH (2013)
Determinants of nucleosome positioning
Kevin Struhl et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
Coordinate Regulation of DNA Methylation and H3K27me3 in Mouse Embryonic Stem Cells
James A. Hagarman et al.
PLOS ONE (2013)
RNA-Guided Human Genome Engineering via Cas9
Prashant Mali et al.
SCIENCE (2013)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
ChromHMM: automating chromatin-state discovery and characterization
Jason Ernst et al.
NATURE METHODS (2012)
Linking genome to epigenome
Guo-Cheng Yuan
WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE (2012)
A motif-independent metric for DNA sequence specificity
Luca Pinello et al.
BMC BIOINFORMATICS (2011)
Mechanisms for the Inheritance of Chromatin States
Danesh Moazed
CELL (2011)
Discriminative prediction of mammalian enhancers from DNA sequence
Dongwon Lee et al.
GENOME RESEARCH (2011)
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
Peter V. Kharchenko et al.
NATURE (2011)
A TALE nuclease architecture for efficient genome editing
Jeffrey C. Miller et al.
NATURE BIOTECHNOLOGY (2011)
Increased methylation variation in epigenetic domains across cancer types
Kasper Daniel Hansen et al.
NATURE GENETICS (2011)
Identification of genetic elements that autonomously determine DNA methylation states
Florian Lienert et al.
NATURE GENETICS (2011)
iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model
Wei-Zhong Lin et al.
PLOS ONE (2011)
BART: BAYESIAN ADDITIVE REGRESSION TREES
Hugh A. Chipman et al.
ANNALS OF APPLIED STATISTICS (2010)
Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model
Jessica L. Larson et al.
BMC BIOINFORMATICS (2010)
Prediction of Polycomb target genes in mouse embryonic stem cells
Yingchun Liu et al.
GENOMICS (2010)
Relationship between nucleosome positioning and DNA methylation
Ramakrishna K. Chodavarapu et al.
NATURE (2010)
Discovery and characterization of chromatin states for systematic annotation of the human genome
Jason Ernst et al.
NATURE BIOTECHNOLOGY (2010)
Computational Epigenetics: the new scientific paradigm
Shen Jean Lim et al.
BIOINFORMATION (2010)
ON THE COMPUTATIONAL COMPLEXITY OF MCMC-BASED ESTIMATORS IN LARGE SAMPLES
Alexandre Belloni et al.
ANNALS OF STATISTICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Chromatin Signatures in Multipotent Human Hematopoietic Stem Cells Indicate the Fate of Bivalent Genes during Differentiation
Kairong Cui et al.
CELL STEM CELL (2009)
A multi-layer method to study genome-scale positions of nucleosomes
Vito Di Gesu et al.
GENOMICS (2009)
Targeted Recruitment of Histone Modifications in Humans Predicted by Genomic Sequences
Guo-Cheng Yuan
JOURNAL OF COMPUTATIONAL BIOLOGY (2009)
The DNA-encoded nucleosome organization of a eukaryotic genome
Noam Kaplan et al.
NATURE (2009)
Human DNA methylomes at base resolution show widespread epigenomic differences
Ryan Lister et al.
NATURE (2009)
ChIP-seq accurately predicts tissue-specific activity of enhancers
Axel Visel et al.
NATURE (2009)
Computation for ChIP-seq and RNA-seq studies
Shirley Pepke et al.
NATURE METHODS (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Reconstructing phylogenies from noisy quartets in polynomial time with a high success probability
Gang Wu et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2008)
Long-range chromosomal interactions and gene regulation
Adriana Miele et al.
MOLECULAR BIOSYSTEMS (2008)
Genome-scale DNA methylation maps of pluripotent and differentiated cells
Alexander Meissner et al.
NATURE (2008)
Extracting sequence features to predict proteinDNA interactions: a comparative study
Qing Zhou et al.
NUCLEIC ACIDS RESEARCH (2008)
Genomic sequence is highly predictive of local nucleosome depletion
Guo-Cheng Yuan et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals
Yair Field et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Computational epigenetics
Christoph Bock et al.
BIOINFORMATICS (2008)
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
Tarjei S. Mikkelsen et al.
NATURE (2007)
Nucleosome positioning signals in genomic DNA
Heather E. Peckham et al.
GENOME RESEARCH (2007)
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment
Paolo Ferragina et al.
BMC BIOINFORMATICS (2007)
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Ewan Birney et al.
NATURE (2007)
High-resolution profiling of histone methylations in the human genome
Artern Barski et al.
CELL (2007)
The mammalian epigenome
Bradley E. Bernstein et al.
CELL (2007)
Chromatin modifications and their function
Tony Kouzarides
CELL (2007)
Integration of genome and chromatin structure with gene expression profiles to predict c-MYC recognition site binding and function
Yili Chen et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
A genomic code for nucleosome positioning
Eran Segal et al.
NATURE (2006)
Computational prediction of methylation status in human genomic sequences
Rajdeep Das et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Genome-scale identification of nucleosome positions in S-cerevisiae
GC Yuan et al.
SCIENCE (2005)
The similarity metric
M Li et al.
IEEE TRANSACTIONS ON INFORMATION THEORY (2004)
Epigenetics in human disease and prospects for epigenetic therapy
G Egger et al.
NATURE (2004)
Alignment-free sequence comparison - a review
S Vinga et al.
BIOINFORMATICS (2003)
DNA methylation patterns and epigenetic memory
A Bird
GENES & DEVELOPMENT (2002)
Genome-wide location and function of DNA binding proteins
B Ren et al.
SCIENCE (2000)
分享论文
