4.7 Article

The UCSC genome browser and associated tools

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

The UCSC Genome Browser database: extensions and updates 2011

Timothy R. Dreszer et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Ensembl 2012

Paul Flicek et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Letter Biotechnology & Applied Microbiology

Integrative genomics viewer

James T. Robinson et al.

NATURE BIOTECHNOLOGY (2011)

Article Genetics & Heredity

A copy number variation morbidity map of developmental delay

Gregory M. Cooper et al.

NATURE GENETICS (2011)

Article Biochemistry & Molecular Biology

Ensembl 2011

Paul Flicek et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

GenBank

Dennis A. Benson et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

ENCODE whole-genome data in the UCSC genome browser (2011 update)

Brian J. Raney et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

The UCSC Genome Browser database: update 2011

Pauline A. Fujita et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

BigWig and BigBed: enabling browsing of large distributed datasets

W. J. Kent et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

William McLaren et al.

BIOINFORMATICS (2010)

Article Biotechnology & Applied Microbiology

The NIH Roadmap Epigenomics Mapping Consortium

Bradley E. Bernstein et al.

NATURE BIOTECHNOLOGY (2010)

Letter Genetics & Heredity

Public data archives for genomic structural variation

Deanna M. Church et al.

NATURE GENETICS (2010)

Article Biochemistry & Molecular Biology

The UCSC Genome Browser database: update 2010

Brooke Rhead et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Ensembl's 10th year

Paul Flicek et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

The Universal Protein Resource (UniProt) in 2010

Rolf Apweiler et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Genetics & Heredity

DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources

Helen V. Firth et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2009)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Evolutionary Biology

Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species

David Haussler et al.

JOURNAL OF HEREDITY (2009)

Article Biochemistry & Molecular Biology

McKusick's Online Mendelian Inheritance in Man (OMIM®)

Joanna Amberger et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

The UCSC Genome Browser Database: update 2009

R. M. Kuhn et al.

NUCLEIC ACIDS RESEARCH (2009)

News Item Multidisciplinary Sciences

DNA sequencing - A plan to capture human diversity in 1000 genomes

Jocelyn Kaiser

SCIENCE (2008)

Article Biochemistry & Molecular Biology

TreeFam: 2008 update

Jue Ruan et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

The HGNC Database in 2008: a resource for the human genome

Elspeth A. Bruford et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

The Mouse Genome Database (MGD): mouse biology and model systems

Carol J. Bult et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemical Research Methods

The UCSC Known Genes

F Hsu et al.

BIOINFORMATICS (2006)

Article Biochemical Research Methods

Using multiple alignments to improve gene prediction

SS Gross et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2006)

Review Genetics & Heredity

Structural variation in the human genome

L Feuk et al.

NATURE REVIEWS GENETICS (2006)

Article Biochemistry & Molecular Biology

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

A Siepel et al.

GENOME RESEARCH (2005)

Article Cell Biology

Repbase update, a database of eukaryotic repetitive elements

J Jurka et al.

CYTOGENETIC AND GENOME RESEARCH (2005)

Article Multidisciplinary Sciences

A gene atlas of the mouse and human protein-encoding transcriptomes

AI Su et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

Aligning multiple genomic sequences with the threaded blockset aligner

M Blanchette et al.

GENOME RESEARCH (2004)

Article Genetics & Heredity

Detection of large-scale variation in the human genome

AJ Iafrate et al.

NATURE GENETICS (2004)

Article Multidisciplinary Sciences

Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes

WJ Kent et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE

M Safran et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

The Generic Genome Browser: A building block for a model organism system database

LD Stein et al.

GENOME RESEARCH (2002)

Article Multidisciplinary Sciences

Recent segmental duplications in the human genome

JA Bailey et al.

SCIENCE (2002)

Article Genetics & Heredity

GeneTests-GeneClinics: Genetic testing information for a growing audience

RA Pagon et al.

HUMAN MUTATION (2002)

Article Biochemistry & Molecular Biology

Assembly of the working draft of the human genome with GigAssembler

WJ Kent et al.

GENOME RESEARCH (2001)

Article Multidisciplinary Sciences

A physical map of the human genome

JD McPherson et al.

NATURE (2001)

Article Biochemistry & Molecular Biology

dbSNP: the NCBI database of genetic variation

ST Sherry et al.

NUCLEIC ACIDS RESEARCH (2001)

Article Biochemistry & Molecular Biology

The Intronerator: exploring introns and alternative splicing in Caenorhabditis elegans

WJ Kent et al.

NUCLEIC ACIDS RESEARCH (2000)