相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data
Ken Chen et al.
BIOINFORMATICS (2012)
Detection of Redundant Fusion Transcripts as Biomarkers or Disease- Specific Therapeutic Targets in Breast Cancer
Yan W. Asmann et al.
CANCER RESEARCH (2012)
Systematic Screen for Tyrosine Kinase Rearrangements Identifies a Novel C6orf204-PDGFRB Fusion in a Patient with Recurrent T-ALL and an Associated Myeloproliferative Neoplasm
Juliann Chmielecki et al.
GENES CHROMOSOMES & CANCER (2012)
Discovery of ALK-PTPN3 gene fusion from human non-small cell lung carcinoma cell line using next generation RNA sequencing
Yeonjoo Jung et al.
GENES CHROMOSOMES & CANCER (2012)
NGS Catalog: A Database of Next Generation Sequencing Studies in Humans
Junfeng Xia et al.
HUMAN MUTATION (2012)
Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer
Chunxiao Wu et al.
JOURNAL OF PATHOLOGY (2012)
Identification of new ALK and RET gene fusions from colorectal and lung cancer biopsies
Doron Lipson et al.
NATURE MEDICINE (2012)
KIF5B-RET fusions in lung adenocarcinoma
Takashi Kohno et al.
NATURE MEDICINE (2012)
R-SAP: a multi-threading computational pipeline for the characterization of high-throughput RNA-sequencing data
Vinay K. Mittal et al.
NUCLEIC ACIDS RESEARCH (2012)
14-3-3 fusion oncogenes in high-grade endometrial stromal sarcoma
Cheng-Han Lee et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs
Marcus Kinsella et al.
BIOINFORMATICS (2011)
Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data
Andrew McPherson et al.
BIOINFORMATICS (2011)
R453Plus1Toolbox: an R/Bioconductor package for analyzing Roche 454 Sequencing data
Hans-Ulrich Klein et al.
BIOINFORMATICS (2011)
FusionHunter: identifying fusion transcripts in cancer using paired-end RNA-seq
Yang Li et al.
BIOINFORMATICS (2011)
Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)
Gregory R. Grant et al.
BIOINFORMATICS (2011)
FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution
Huanying Ge et al.
BIOINFORMATICS (2011)
ChimeraScan: a tool for identifying chimeric transcription in sequencing data
Matthew K. Iyer et al.
BIOINFORMATICS (2011)
Identification of gene fusion transcripts by transcriptome sequencing in BRCA1-mutated breast cancers and cell lines
Kevin C. H. Ha et al.
BMC MEDICAL GENOMICS (2011)
Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples
Serban Nacu et al.
BMC MEDICAL GENOMICS (2011)
Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing
Dorothee Pflueger et al.
GENOME RESEARCH (2011)
Identification of a Novel TP53 Cancer Susceptibility Mutation Through Whole-Genome Sequencing of a Patient With Therapy-Related AML
Daniel C. Link et al.
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2011)
Use of Whole-Genome Sequencing to Diagnose a Cryptic Fusion Oncogene
John S. Welch et al.
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2011)
被撤回的出版物: Evaluation of next-generation sequencing software in mapping and assembly (Retracted article. See vol. 56, pg. 687, 2011)
Suying Bao et al.
JOURNAL OF HUMAN GENETICS (2011)
Clinical cancer genomics: how soon is now?
Barry S. Taylor et al.
JOURNAL OF PATHOLOGY (2011)
Field guide to next-generation DNA sequencers
Travis C. Glenn
MOLECULAR ECOLOGY RESOURCES (2011)
Targeted next-generation sequencing detects point mutations, insertions, deletions and balanced chromosomal rearrangements as well as identifies novel leukemia-specific fusion genes in a single procedure
V. Grossmann et al.
LEUKEMIA (2011)
MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers
Christian Steidl et al.
NATURE (2011)
The genomic complexity of primary human prostate cancer
Michael F. Berger et al.
NATURE (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
High-resolution characterization of a hepatocellular carcinoma genome
Yasushi Totoki et al.
NATURE GENETICS (2011)
Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion
Adam J. Bass et al.
NATURE GENETICS (2011)
Functionally recurrent rearrangements of the MAST kinase and Notch gene families in breast cancer
Dan R. Robinson et al.
NATURE MEDICINE (2011)
CREST maps somatic structural variation in cancer genomes with base-pair resolution
Jianmin Wang et al.
NATURE METHODS (2011)
APPLICATIONS OF NEXT-GENERATION SEQUENCING Genome structural variation discovery and genotyping
Can Alkan et al.
NATURE REVIEWS GENETICS (2011)
A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines
Yan W. Asmann et al.
NUCLEIC ACIDS RESEARCH (2011)
Identification of a Disease-Defining Gene Fusion in Epithelioid Hemangioendothelioma
Munir R. Tanas et al.
SCIENCE TRANSLATIONAL MEDICINE (2011)
Urine TMPRSS2:ERG Fusion Transcript Stratifies Prostate Cancer Risk in Men with Elevated Serum PSA
Scott A. Tomlins et al.
SCIENCE TRANSLATIONAL MEDICINE (2011)
ESRRA-C11orf20 Is a Recurrent Gene Fusion in Serous Ovarian Carcinoma
Julia Salzman et al.
PLOS BIOLOGY (2011)
deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data
Andrew McPherson et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
Identification of fusion genes in breast cancer by paired-end RNA-sequencing
Henrik Edgren et al.
GENOME BIOLOGY (2011)
The real cost of sequencing: higher than you think!
Andrea Sboner et al.
GENOME BIOLOGY (2011)
TopHat-Fusion: an algorithm for discovery of novel fusion transcripts
Daehwan Kim et al.
GENOME BIOLOGY (2011)
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery
Fereydoun Hormozdiari et al.
BIOINFORMATICS (2010)
SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data
Bruno Zeitouni et al.
BIOINFORMATICS (2010)
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing
David Stephen Horner et al.
BRIEFINGS IN BIOINFORMATICS (2010)
Application of second-generation sequencing to cancer genomics
Keith Robison
BRIEFINGS IN BIOINFORMATICS (2010)
Challenges of sequencing human genomes
Daniel C. Koboldt et al.
BRIEFINGS IN BIOINFORMATICS (2010)
A survey of sequence alignment algorithms for next-generation sequencing
Heng Li et al.
BRIEFINGS IN BIOINFORMATICS (2010)
Detecting structural variations in the human genome using next generation sequencing
Ruibin Xi et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2010)
Integrative analysis of the melanoma transcriptome
Michael F. Berger et al.
GENOME RESEARCH (2010)
Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome
Aaron R. Quinlan et al.
GENOME RESEARCH (2010)
A window into third-generation sequencing
Eric E. Schadt et al.
HUMAN MOLECULAR GENETICS (2010)
A small-cell lung cancer genome with complex signatures of tobacco exposure
Erin D. Pleasance et al.
NATURE (2010)
A comprehensive catalogue of somatic mutations from a human cancer genome
Erin D. Pleasance et al.
NATURE (2010)
Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma
Nallasivam Palanisamy et al.
NATURE MEDICINE (2010)
De novo assembly and analysis of RNA-seq data
Gordon Robertson et al.
NATURE METHODS (2010)
APPLICATIONS OF NEXT-GENERATION SEQUENCING Sequencing technologies - the next generation
Michael L. Metzker
NATURE REVIEWS GENETICS (2010)
Advances in understanding cancer genomes through second-generation sequencing
Matthew Meyerson et al.
NATURE REVIEWS GENETICS (2010)
Targeted next-generation sequencing of DNA regions proximal to a conserved GXGXXG signaling motif enables systematic discovery of tyrosine kinase fusions in cancer
Juliann Chmielecki et al.
NUCLEIC ACIDS RESEARCH (2010)
FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data
Andrea Sboner et al.
GENOME BIOLOGY (2010)
BIOINFORMATICS FOR NEXT GENERATION SEQUENCING
Alex Bateman et al.
BIOINFORMATICS (2009)
A geometric approach for classification and comparison of structural variants
Suzanne Sindi et al.
BIOINFORMATICS (2009)
Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes
Fereydoun Hormozdiari et al.
GENOME RESEARCH (2009)
Transcriptome sequencing to detect gene fusions in cancer
Christopher A. Maher et al.
NATURE (2009)
Complex landscapes of somatic rearrangement in human breast cancer genomes
Philip J. Stephens et al.
NATURE (2009)
The challenges of sequencing by synthesis
Carl W. Fuller et al.
NATURE BIOTECHNOLOGY (2009)
An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer
Xiao-Song Wang et al.
NATURE BIOTECHNOLOGY (2009)
Computational methods for discovering structural variation with next-generation sequencing
Paul Medvedev et al.
NATURE METHODS (2009)
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
Ken Chen et al.
NATURE METHODS (2009)
Next-generation DNA sequencing techniques
Wilhelm J. Ansorge
NEW BIOTECHNOLOGY (2009)
Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line
Qi Zhao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Chimeric transcript discovery by paired-end transcriptome sequencing
Christopher A. Maher et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data
Jan O. Korbel et al.
GENOME BIOLOGY (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Next-Generation DNA Sequencing Methods
Elaine R. Mardis
Annual Review of Genomics and Human Genetics (2008)
DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome
Timothy J. Ley et al.
NATURE (2008)
Next-generation DNA sequencing
Jay Shendure et al.
NATURE BIOTECHNOLOGY (2008)
Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing
Peter J. Campbell et al.
NATURE GENETICS (2008)
Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer
Ali Bashir et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Expression of the TMPRSS2:ERG fusion gene predicts cancer recurrence after surgery for localised prostate cancer
R. K. Nam et al.
BRITISH JOURNAL OF CANCER (2007)
Distinct classes of chromosomal rearrangements create oncogenic ETS gene fusions in prostate cancer
Scott A. Tomlins et al.
NATURE (2007)
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
Kim D. Pruitt et al.
NUCLEIC ACIDS RESEARCH (2007)
The impact of translocations and gene fusions on cancer causation
Felix Mitelman et al.
NATURE REVIEWS CANCER (2007)
Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer
SA Tomlins et al.
SCIENCE (2005)
Glivec (ST1571, Imatinib), a rationally developed, targeted anticancer drug
R Capdeville et al.
NATURE REVIEWS DRUG DISCOVERY (2002)