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Shulei Sun et al.
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Peter J. Turnbaugh et al.
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Naryttza N. Diaz et al.
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BLAST plus : architecture and applications
Christiam Camacho et al.
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Dongying Wu et al.
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Microbial community structure and its functional implications
Jed A. Fuhrman
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Database resources of the National Center for Biotechnology Information
Eric W. Sayers et al.
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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
J. R. Cole et al.
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The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
F. Meyer et al.
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David T. Pride et al.
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The impact of next-generation sequencing technology on genetics
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Environmental genome shotgun sequencing of the Sargasso Sea
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GW Tyson et al.
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H Teeling et al.
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