期刊
BRIEFINGS IN BIOINFORMATICS
卷 15, 期 1, 页码 54-64出版社
OXFORD UNIV PRESS
DOI: 10.1093/bib/bbs077
关键词
Delaunay triangulation; alpha shape; protein-DNA interactions; protein-protein interactions; protein-ligand interactions; protein structure analysis
资金
- Hong Kong Research Grants Council [CityU 123809]
In recent years, more 3D protein structures have become available, which has made the analysis of large molecular structures much easier. There is a strong demand for geometric models for the study of protein-related interactions. Alpha shape and Delaunay triangulation are powerful tools to represent protein structures and have advantages in characterizing the surface curvature and atom contacts. This review presents state-of-the-art applications of alpha shape and Delaunay triangulation in the studies on protein-DNA, protein-protein, protein-ligand interactions and protein structure analysis.
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