相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。CNAmet: an R package for integrating copy number, methylation and expression data
Riku Louhimo et al.
BIOINFORMATICS (2011)
Preprocessing and downstream analysis of microarray DNA copy number profiles
Mark A. van de Wiel et al.
BRIEFINGS IN BIOINFORMATICS (2011)
REGULARIZED MULTIVARIATE REGRESSION FOR IDENTIFYING MASTER PREDICTORS WITH APPLICATION TO INTEGRATIVE GENOMICS STUDY OF BREAST CANCER
Jie Peng et al.
ANNALS OF APPLIED STATISTICS (2010)
DR-Integrator: a new analytic tool for integrating DNA copy number and gene expression data
Keyan Salari et al.
BIOINFORMATICS (2010)
Integrative analysis of gene expression and copy number alterations using canonical correlation analysis
Charlotte Soneson et al.
BMC BIOINFORMATICS (2010)
Integrative Genomic Profiling of Human Prostate Cancer
Barry S. Taylor et al.
CANCER CELL (2010)
An Integrated Approach to Uncover Drivers of Cancer
Uri David Akavia et al.
CELL (2010)
Discovery of molecular subtypes in leiomyosarcoma through integrative molecular profiling
A. H. Beck et al.
ONCOGENE (2010)
Integrated analysis of copy number alterations and gene expression: a bivariate assessment of equally directed abnormalities
Martin Schaefer et al.
BIOINFORMATICS (2009)
Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis
Ronglai Shen et al.
BIOINFORMATICS (2009)
Nonparametric Testing for DNA Copy Number Induced Differential mRNA Gene Expression
Wessel N. van Wieringen et al.
BIOMETRICS (2009)
Integrated analysis of DNA copy number and gene expression microarray data using gene sets
Renee X. Menezes et al.
BMC BIOINFORMATICS (2009)
Copy Number Alterations that Predict Metastatic Capability of Human Breast Cancer
Yi Zhang et al.
CANCER RESEARCH (2009)
Identification of Potential Driver Genes in Human Liver Carcinoma by Genomewide Screening
Hyun Goo Woo et al.
CANCER RESEARCH (2009)
Correlation Analysis between Single-Nucleotide Polymorphism and Expression Arrays in Gliomas Identifies Potentially Relevant Target Genes
Yuri Kotliarov et al.
CANCER RESEARCH (2009)
Integrated Genome-Wide DNA Copy Number and Expression Analysis Identifies Distinct Mechanisms of Primary Chemoresistance in Ovarian Carcinomas
Dariush Etemadmoghadam et al.
CLINICAL CANCER RESEARCH (2009)
HIGHLIGHTING RELATIONSHIPS BETWEEN HETEROGENEOUS BIOLOGICAL DATA THROUGH GRAPHICAL DISPLAYS BASED ON REGULARIZED CANONICAL CORRELATION ANALYSIS
I. Gonzalez et al.
JOURNAL OF BIOLOGICAL SYSTEMS (2009)
Computational methods for discovering structural variation with next-generation sequencing
Paul Medvedev et al.
NATURE METHODS (2009)
A computational procedure to identify significant overlap of differentially expressed and genomic imbalanced regions in cancer datasets
Silvio Bicciato et al.
NUCLEIC ACIDS RESEARCH (2009)
Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes
Hyunju Lee et al.
BIOINFORMATICS (2008)
SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes
Raj Chari et al.
BMC BIOINFORMATICS (2008)
Focal gains of VEGFA and molecular classification of hepatocellular carcinoma
Derek Y. Chiang et al.
CANCER RESEARCH (2008)
Applications of next-generation sequencing technologies in functional genomics
Olena Morozova et al.
GENOMICS (2008)
Integrated gene copy number and expression microarray analysis of gastric cancer highlights potential target genes
Samuel Myllykangas et al.
INTERNATIONAL JOURNAL OF CANCER (2008)
Genome-wide analysis of DNA copy number alterations and gene expression in gastric cancer
Y. Tsukamoto et al.
JOURNAL OF PATHOLOGY (2008)
CAMK1D amplification implicated in epithelial-mesenchymal transition in basal-like breast cancer
Anna Bergamaschi et al.
MOLECULAR ONCOLOGY (2008)
Somatic mutations affect key pathways in lung adenocarcinoma
Li Ding et al.
NATURE (2008)
An integrated genomic analysis of human glioblastoma Multiforme
D. Williams Parsons et al.
SCIENCE (2008)
Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays
Johan Staaf et al.
GENOME BIOLOGY (2008)
Combined single nucleotide polymorphism-based genomic mapping and global gene expression profiling identifies novel chromosomal imbalances, mechanisms and candidate genes important in the pathogenesis of T-cell prolymphocytic leukemia with inv(14)(q11q32)
J. Duerig et al.
LEUKEMIA (2007)
Integrative genomic analysis of small-cell lung carcinoma reveals correlates of sensitivity to Bcl-2 antagonists and uncovers novel chromosomal gains
Edward T. Olejniczak et al.
MOLECULAR CANCER RESEARCH (2007)
Targets of genome copy number reduction in primary breast cancers identified by integrative genomics
Wei Chen et al.
GENES CHROMOSOMES & CANCER (2007)
Identification of IGF2 signaling through phosphoinositide-3-kinase regulatory subunit 3 as a growth-promoting axis in glioblastoma
Liliana Soroceanu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Relative impact of nucleotide and copy number variation on gene expression phenotypes
Barbara E. Stranger et al.
SCIENCE (2007)
Cancer as an evolutionary and ecological process
Lauren M. F. Merlo et al.
NATURE REVIEWS CANCER (2006)
Genomic and transcriptional aberrations linked to breast cancer pathophysiologies
Koei Chin et al.
CANCER CELL (2006)
Global variation in copy number in the human genome
Richard Redon et al.
NATURE (2006)
Identification of target genes in laryngeal squamous cell carcinoma by high-resolution copy number and gene expression microarray analyses
A-K Jarvinen et al.
ONCOGENE (2006)
Identification of novel candidate target genes in amplicons of Glioblastoma multiforme tumors detected by expression and CGH microarray profiling
Yolanda Ruano et al.
MOLECULAR CANCER (2006)
High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping
Daniel A. Peiffer et al.
GENOME RESEARCH (2006)
ACE-it: a tool for genome-wide integration of gene dosage and RNA expression data
Wessel N. van Wieringen et al.
BIOINFORMATICS (2006)
Combined cDNA array comparative genomic hybridization and serial analysis of gene expression analysis of breast tumor progression
J Yao et al.
CANCER RESEARCH (2006)
Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model
P Broët et al.
BIOINFORMATICS (2006)
Comparison of gene expression and DNA copy number changes in a murine model of lung cancer
A Sweet-Cordero et al.
GENES CHROMOSOMES & CANCER (2006)
Genetic regulators of large-scale transcriptional signatures in cancer
AS Adler et al.
NATURE GENETICS (2006)
Molecular subclasses of high-grade glioma predict prognosis, delineate a pattern of disease progression, and resemble stages in neurogenesis
HS Phillips et al.
CANCER CELL (2006)
Genomic and expression profiling identifies the B-cell associated tyrosine kinase Syk as a possible therapeutic target in mantle cell lymphoma
A Rinaldi et al.
BRITISH JOURNAL OF HAEMATOLOGY (2006)
Jointly analyzing gene expression and copy number data in breast cancer using data reduction models
JA Berger et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2006)
Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanoma
LA Garraway et al.
NATURE (2005)
High-resolution genomic profiles of human lung cancer
G Tonon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Array comparative genomic hybridization and its applications in cancer
D Pinkel et al.
NATURE GENETICS (2005)
Gene expression signature of fibroblast serum response predicts human cancer progression: Similarities between tumors and wounds
HY Chang et al.
PLOS BIOLOGY (2004)
Gene expression alterations over large chromosomal regions in cancers include multiple genes unrelated to malignant progression
BG Masayesva et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
High-resolution analysis of gene copy number alterations in human prostate cancer using CGH on cDNA microarrays: Impact of copy number on gene expression
M Wolf et al.
NEOPLASIA (2004)
Chromosome aberrations in solid tumors
DG Albertson et al.
NATURE GENETICS (2003)
Are cancers dependent on oncogenes or on aneuploidy?
PH Duesberg
CANCER GENETICS AND CYTOGENETICS (2003)
Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
JR Pollack et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Ptprj is a candidate for the mouse colon-cancer susceptibility locus Scc1 and is frequently deleted in human cancers
CAL Ruivenkamp et al.
NATURE GENETICS (2002)
Clinical resistance to STI-571 cancer therapy caused by BCR-ABL gene mutation or amplification
ME Gorre et al.
SCIENCE (2001)
Comprehensive copy number and gene expression profiling of the 17q23 amplicon in human breast cancer
O Monni et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
APC mutations are sufficient for the growth of early colorectal adenomas
H Lamlum et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Aneuploidy vs. gene mutation hypothesis of cancer: Recent study claims mutation but is found to support aneuploidy
RH Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)