4.0 Article

Biological interaction networks are conserved at the module level

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Is My Network Module Preserved and Reproducible?

Peter Langfelder et al.

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Biochemical Research Methods

SPICi: a fast clustering algorithm for large biological networks

Peng Jiang et al.

BIOINFORMATICS (2010)

Article Biotechnology & Applied Microbiology

Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering

Dwight Kuo et al.

GENOME BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Evolution of Phosphoregulation: Comparison of Phosphorylation Patterns across Yeast Species

Pedro Beltrao et al.

PLOS BIOLOGY (2009)

Article Multidisciplinary Sciences

Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes

Scott J. Dixon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Null mutations in human and mouse orthologs frequently result in different phenotypes

Ben-Yang Liao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemical Research Methods

Protein Complex Evolution Does Not Involve Extensive Network Rewiring

Teunis J. P. van Dam et al.

PLOS COMPUTATIONAL BIOLOGY (2008)

Article Multidisciplinary Sciences

Divergence of transcription factor binding sites across related yeast species

Anthony R. Borneman et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

Reconstructing the evolution of the mitochondrial ribosomal proteome

Paulien Smits et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemical Research Methods

A new method to measure the semantic similarity of GO terms

James Z. Wang et al.

BIOINFORMATICS (2007)

Article Biochemical Research Methods

In search of the biological significance of modular structures in protein networks

Zhi Wang et al.

PLOS COMPUTATIONAL BIOLOGY (2007)

Article Biochemical Research Methods

Evaluation of clustering algorithms for protein-protein interaction networks

Sylvain Brohee et al.

BMC BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

Cross-species analysis of biological networks by Bayesian alignment

Johannes Berg et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution

Ben-Yang Liao et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Multidisciplinary Sciences

Proteome survey reveals modularity of the yeast cell machinery

AC Gavin et al.

NATURE (2006)

Article Multidisciplinary Sciences

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

NJ Krogan et al.

NATURE (2006)

Article Biochemistry & Molecular Biology

BioGRID: a general repository for interaction datasets

Chris Stark et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Multidisciplinary Sciences

The Plasmodium protein network diverges from those of other eukaryotes

S Suthram et al.

NATURE (2005)

Article Multidisciplinary Sciences

Transcriptional regulatory code of a eukaryotic genome

CT Harbison et al.

NATURE (2004)

Article Genetics & Heredity

Periodic gene expression program of the fission yeast cell cycle

G Rustici et al.

NATURE GENETICS (2004)

Article Multidisciplinary Sciences

A probabilistic functional network of yeast genes

I Lee et al.

SCIENCE (2004)

Article Biochemistry & Molecular Biology

Similarities and differences in genome-wide expression data of six organisms

S Bergmann et al.

PLOS BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Annotation transfer between genomes: Protein-protein interologs and protein-DNA regulogs

HY Yu et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

GeneDB: a resource for prokaryotic and eukaryotic organisms

C Hertz-Fowler et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Multidisciplinary Sciences

A gene-coexpression network for global discovery of conserved genetic modules

JM Stuart et al.

SCIENCE (2003)

Article Biochemistry & Molecular Biology

An efficient algorithm for large-scale detection of protein families

AJ Enright et al.

NUCLEIC ACIDS RESEARCH (2002)