相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing
Dorothee Pflueger et al.
GENOME RESEARCH (2011)
Fast and SNP-tolerant detection of complex variants and splicing in short reads
Thomas D. Wu et al.
BIOINFORMATICS (2010)
Proteomic Characterization of Novel Alternative Splice Variant Proteins in Human Epidermal Growth Factor Receptor 2/neu-Induced Breast Cancers
Rajasree Menon et al.
CANCER RESEARCH (2010)
FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data
Andrea Sboner et al.
GENOME BIOLOGY (2010)
Global and unbiased detection of splice junctions from RNA-seq data
Adam Ameur et al.
GENOME BIOLOGY (2010)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
SLC45A3-ELK4 Is a Novel and Frequent Erythroblast Transformation-Specific Fusion Transcript in Prostate Cancer
David S. Rickman et al.
CANCER RESEARCH (2009)
Nuclear Receptor-Induced Chromosomal Proximity and DNA Breaks Underlie Specific Translocations in Cancer
Chunru Lin et al.
CELL (2009)
A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome
Oliver A. Hampton et al.
GENOME RESEARCH (2009)
Functional Pre-mRNA trans-Splicing of Coactivator CoAA and Corepressor RBM4 during Stem/Progenitor Cell Differentiation
Yang S. Brooks et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis
Rolf I. Skotheim et al.
MOLECULAR CANCER (2009)
Transcriptome sequencing to detect gene fusions in cancer
Christopher A. Maher et al.
NATURE (2009)
An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer
Xiao-Song Wang et al.
NATURE BIOTECHNOLOGY (2009)
RNA-Seq: a revolutionary tool for transcriptomics
Zhong Wang et al.
NATURE REVIEWS GENETICS (2009)
Chimeric transcript discovery by paired-end transcriptome sequencing
Christopher A. Maher et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts
Joshua Z. Levin et al.
GENOME BIOLOGY (2009)
Optimal spliced alignments of short sequence reads
Fabio De Bona et al.
BIOINFORMATICS (2008)
Alternative isoform regulation in human tissue transcriptomes
Eric T. Wang et al.
NATURE (2008)
Multiple newly identified loci associated with prostate cancer susceptibility
Rosalind A. Eeles et al.
NATURE GENETICS (2008)
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
Qun Pan et al.
NATURE GENETICS (2008)
Stem cell transcriptome profiling via massive-scale mRNA sequencing
Nicole Cloonan et al.
NATURE METHODS (2008)
Universal Reference RNA is not a representative normal sample for oligonucleotide microarray studies
Wilfrido D. Mojica et al.
PATHOLOGY & ONCOLOGY RESEARCH (2008)
A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells
Hui Li et al.
SCIENCE (2008)
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
Marc Sultan et al.
SCIENCE (2008)
RBM6-RBM5 transcription-induced chimeras are differentially expressed in tumours
Ke Wang et al.
BMC GENOMICS (2007)
Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using paired-end diTags (PETs)
Yijun Ruan et al.
GENOME RESEARCH (2007)
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
France Denoeud et al.
GENOME RESEARCH (2007)
Diversity of TMPRSS2-ERG fusion transcripts in the human prostate
J. Clark et al.
ONCOGENE (2007)
IQCJ-SCHIP1, a novel fusion transcript encoding a calmodulin-binding IQ motif protein
Dorota A. Kwasnicka-Crawford et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2006)
TMPRSS2:ERG fusion by translocation or interstitial deletion is highly relevant in androgen-dependent prostate cancer, but is bypassed in late-stage androgen receptor-negative prostate cancer
Karin G. Hermans et al.
CANCER RESEARCH (2006)
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
Leming Shi et al.
NATURE BIOTECHNOLOGY (2006)
Evaluation of DNA microarray results with quantitative gene expression platforms
Roger D. Canales et al.
NATURE BIOTECHNOLOGY (2006)
Expression of variant TMPRSS2/ERG fusion messenger RNAs is associated with aggressive prostate cancer
Jianghua Wang et al.
CANCER RESEARCH (2006)
Verification of predicted alternatively spliced Wnt genes reveals two new splice variants (CTNNB1 and LRP5) and altered Axin-1 expression during tumour progression
Heike Pospisil et al.
BMC GENOMICS (2006)
Tandem chimerism as a means to increase protein complexity in the human genome
G Parra et al.
GENOME RESEARCH (2006)
Transcription-mediated gene fusion in the human genome
P Akiva et al.
GENOME RESEARCH (2006)
AceView: a comprehensive cDNA-supported gene and transcripts annotation
Danielle Thierry-Mieg et al.
GENOME BIOLOGY (2006)
Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer
SA Tomlins et al.
SCIENCE (2005)
Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays
P Kapranov et al.
GENOME RESEARCH (2005)
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
TD Wu et al.
BIOINFORMATICS (2005)
Hodgkin's lymphoma cell lines express a fusion protein encoded by intergenically spliced mRNA for the multilectin receptor DEC-205 (CD205) and a novel C-type lectin receptor DCL-1
M Kato et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Reducing the agonist activity of antiandrogens by a dominant-negative androgen receptor coregulator ARA70 in prostate cancer cells
MM Rahman et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
BP Lewis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Cloning of BCAS3 (17q23) and BCAS4 (20q13) genes that undergo amplification, overexpression, and fusion in breast cancer
M Bärlund et al.
GENES CHROMOSOMES & CANCER (2002)
An endogenous hybrid mRNA encodes TWE-PRIL, a functional cell surface TWEAK-APRIL fusion protein
B Pradet-Balade et al.
EMBO JOURNAL (2002)
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
R Edgar et al.
NUCLEIC ACIDS RESEARCH (2002)
Cotranscription and intergenic splicing of human P2Y11 SSF1 genes
D Communi et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Fusion of the human gene for the polyubiquitination coeffector UEV1 with Kua, a newly identified gene
TM Thomson et al.
GENOME RESEARCH (2000)
分享论文
