4.7 Article

Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Microbiology

Dynamics of CMY-2 producing E. coli in a broiler parent flock

Anita Dame-Korevaar et al.

VETERINARY MICROBIOLOGY (2017)

Article Infectious Diseases

High-virulence CMY-2-and CTX-M-2-producing avian pathogenic Escherichia coli strains isolated from commercial turkeys

Ketrin Cristina da Silva et al.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2017)

Review Infectious Diseases

Escherichia coli and urinary tract infections: the role of poultry-meat

A. R. Manges

CLINICAL MICROBIOLOGY AND INFECTION (2016)

Article Infectious Diseases

First report of Escherichia coli co-producing NDM-1 and OXA-232

Anna Both et al.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2016)

Article Infectious Diseases

Circulation of clonal populations of fluoroquinolone-resistant CTX-M-15-producing Escherichia coli ST410 in humans and animals in Germany

Linda Falgenhauer et al.

INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2016)

Article Infectious Diseases

Dynamics of extended-spectrum cephalosporin resistance in pathogenic Escherichia coli isolated from diseased pigs in Quebec, Canada

Seyedehameneh Jahanbakhsh et al.

INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2016)

Article Biochemistry & Molecular Biology

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Multidisciplinary Sciences

Prevalence of mcr-1 in E. coli from Livestock and Food in Germany, 2010-2015

Alexandra Irrgang et al.

PLOS ONE (2016)

Article Veterinary Sciences

Cefotaxime-resistant Escherichia coli in broiler farms-A cross-sectional investigation in Germany

Johanna Hering et al.

PREVENTIVE VETERINARY MEDICINE (2016)

Review Microbiology

Detection, Characterization, and Typing of Shiga Toxin-Producing Escherichia coli

Brendon D. Parsons et al.

FRONTIERS IN MICROBIOLOGY (2016)

Article Infectious Diseases

Dissemination of the chromosomally encoded CMY-2 cephalosporinase gene in Escherichia coli isolated from animals

Liang-Xing Fang et al.

INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2015)

Article Microbiology

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data

Katrine G. Joensen et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2015)

Article Biochemical Research Methods

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data

David Coil et al.

BIOINFORMATICS (2015)

Article Microbiology

Extended-Spectrum-β-Lactamase-Producing Escherichia coli as Intestinal Colonizers in the German Community

Giuseppe Valenza et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)

Article Microbiology

In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

Alessandra Carattoli et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Review Microbiology

Escherichia coli ST131, an Intriguing Clonal Group

Marie-Helene Nicolas-Chanoine et al.

CLINICAL MICROBIOLOGY REVIEWS (2014)

Article Infectious Diseases

Expansive spread of IncI1 plasmids carrying blaCMY-2 amongst Escherichia coli

Hanna E. Sidjabat et al.

INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2014)

Review Infectious Diseases

Horizontal gene transfer in the human gastrointestinal tract: potential spread of antibiotic resistance genes

Jennifer R. Huddleston

INFECTION AND DRUG RESISTANCE (2014)

Article Biotechnology & Applied Microbiology

Longitudinal Monitoring of Extended-Spectrum-Beta-Lactamase/AmpC-Producing Escherichia coli at German Broiler Chicken Fattening Farms

H. Laube et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Food Science & Technology

Identical plasmid AmpC beta-lactamase genes and plasmid types in E. coli isolates from patients and poultry meat in the Netherlands

Guido M. Voets et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2013)

Letter Biotechnology & Applied Microbiology

Updating benchtop sequencing performance comparison

Sebastian Juenemann et al.

NATURE BIOTECHNOLOGY (2013)

Article Biochemistry & Molecular Biology

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

Daniel C. Koboldt et al.

GENOME RESEARCH (2012)

Article Infectious Diseases

Identification of acquired antimicrobial resistance genes

Ea Zankari et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)

Article Microbiology

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

Mette V. Larsen et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2012)

Article Multidisciplinary Sciences

Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011

Yonatan H. Grad et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Infectious Diseases

Escherichia coli O25b-ST131: a pandemic, multiresistant, community-associated strain

Benjamin A. Rogers et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2011)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Review Microbiology

Resistance to cephalosporins and carbapenems in Gram-negative bacterial pathogens

Yvonne Pfeifer et al.

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2010)

Article Infectious Diseases

Prevalence and molecular characterization of clinical isolates of Escherichia coli expressing an AmpC phenotype

Rikke Lind Jorgensen et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2010)

Article Microbiology

Genetic Context of Plasmid-Carried bla(CMY-2)-Like Genes in Enterobacteriaceae

C. Verdet et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2009)

Review Microbiology

Resistance Plasmid Families in Enterobacteriaceae

Alessandra Carattoli

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2009)

Review Microbiology

AmpC beta-Lactamases

George A. Jacoby

CLINICAL MICROBIOLOGY REVIEWS (2009)

Article Infectious Diseases

Change in the prevalence of extended-spectrum-beta-lactamase-producing Escherichia coli in Japan by clonal spread

Satowa Suzuki et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2009)

Article Biotechnology & Applied Microbiology

Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains

Francoise Jaureguy et al.

BMC GENOMICS (2008)

Review Infectious Diseases

CTX-M: changing the face of ESBLs in Europe

David M. Livermore et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2007)

Article Biochemistry & Molecular Biology

Sex and virulence in Escherichia coli:: an evolutionary perspective

Thierry Wirth et al.

MOLECULAR MICROBIOLOGY (2006)

Article Biotechnology & Applied Microbiology

Molecular epidemiology of ceftiofur-resistant Escherichia coli isolates from dairy calves

Sarah C. Donaldson et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Article Biochemistry & Molecular Biology

ISfinder: the reference centre for bacterial insertion sequences

P. Siguier et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biotechnology & Applied Microbiology

Rapid and simple determination of the Escherichia coli phylogenetic group

O Clermont et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)

Article Multidisciplinary Sciences

Parallel evolution of virulence in pathogenic Escherichia coli

SD Reid et al.

NATURE (2000)