相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Small MAF genes variants and chronic myeloid leukemia
Angelica Martinez-Hernandez et al.
EUROPEAN JOURNAL OF HAEMATOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Endogenous Retrotransposition Activates Oncogenic Pathways in Hepatocellular Carcinoma
Ruchi Shukla et al.
CELL (2013)
Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes
Andrew B. Stergachis et al.
CELL (2013)
Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles
Prabhat K. Mandal et al.
HUMAN MOLECULAR GENETICS (2013)
Differential L1 regulation in pluripotent stem cells of humans and apes
Maria C. N. Marchetto et al.
NATURE (2013)
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape
Mingchao Xie et al.
NATURE GENETICS (2013)
(Some) Cellular Mechanisms Influencing the Transcription of Human Endogenous Retrovirus, HERV-Fc1
Magdalena Janina Laska et al.
PLOS ONE (2013)
RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings
Shancheng Ren et al.
CELL RESEARCH (2012)
Active human retrotransposons: variation and disease
Dustin C. Hancks et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2012)
A multiplicity of factors contributes to selective RNA polymerase III occupancy of a subset of RNA polymerase III genes in mouse liver
Donatella Canella et al.
GENOME RESEARCH (2012)
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for IncRNAs
Hagen Tilgner et al.
GENOME RESEARCH (2012)
Extensive somatic L1 retrotransposition in colorectal tumors
Szilvia Solyom et al.
GENOME RESEARCH (2012)
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
Thomas Derrien et al.
GENOME RESEARCH (2012)
Expression of HERV-Fc1, a Human Endogenous Retrovirus, Is Increased in Patients with Active Multiple Sclerosis
Magdalena Janina Laska et al.
JOURNAL OF VIROLOGY (2012)
Landscape of transcription in human cells
Sarah Djebali et al.
NATURE (2012)
A map of the cis-regulatory sequences in the mouse genome
Yin Shen et al.
NATURE (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
The accessible chromatin landscape of the human genome
Robert E. Thurman et al.
NATURE (2012)
ENCODE whole-genome data in the UCSC Genome Browser: update 2012
Kate R. Rosenbloom et al.
NUCLEIC ACIDS RESEARCH (2012)
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
Davis J. McCarthy et al.
NUCLEIC ACIDS RESEARCH (2012)
Transposable Elements in TDP-43-Mediated Neurodegenerative Disorders
Wanhe Li et al.
PLOS ONE (2012)
Landscape of Somatic Retrotransposition in Human Cancers
Eunjung Lee et al.
SCIENCE (2012)
Somatic retrotransposition alters the genetic landscape of the human brain
J. Kenneth Baillie et al.
NATURE (2011)
Dynamic interactions between transposable elements and their hosts
Henry L. Levin et al.
NATURE REVIEWS GENETICS (2011)
Transcription by RNA polymerase III: more complex than we thought
Robert J. White
NATURE REVIEWS GENETICS (2011)
Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
A. P. Jason de Koning et al.
PLOS GENETICS (2011)
Alu elements: know the SINEs
Prescott Deininger
GENOME BIOLOGY (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
A Gibbs sampling strategy applied to the mapping of ambiguous short-sequence tags
Jianrong Wang et al.
BIOINFORMATICS (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells
Donatella Canella et al.
GENOME RESEARCH (2010)
L1 retrotransposition in neurons is modulated by MeCP2
Alysson R. Muotri et al.
NATURE (2010)
Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors
Andrew J. Oler et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells
Zarmik Moqtaderi et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
Close association of RNA polymerase II and many transcription factors with Pol III genes
Debasish Raha et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Long-range function of an intergenic retrotransposon
Wenhu Pi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Estimating enrichment of repetitive elements from high-throughput sequence data
Daniel S. Day et al.
GENOME BIOLOGY (2010)
A scaling normalization method for differential expression analysis of RNA-seq data
Mark D. Robinson et al.
GENOME BIOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Comparative analysis of Alu repeats in primate genomes
George E. Liu et al.
GENOME RESEARCH (2009)
The regulated retrotransposon transcriptome of mammalian cells
Geoffrey J. Faulkner et al.
NATURE GENETICS (2009)
The impact of retrotransposons on human genome evolution
Richard Cordaux et al.
NATURE REVIEWS GENETICS (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Trex1 prevents cell-intrinsic initiation of autoimmunity
Daniel B. Stetson et al.
CELL (2008)
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
Xi Chen et al.
CELL (2008)
Evolution of the mammalian transcription factor binding repertoire via transposable elements
Guillaume Bourque et al.
GENOME RESEARCH (2008)
A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE
Geoffrey J. Faulkner et al.
GENOMICS (2008)
Modeling ChIP Sequencing In Silico with Applications
Zhengdong D. Zhang et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
Tarjei S. Mikkelsen et al.
NATURE (2007)
SVA elements: A hominid-specific retroposon family
H Wang et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
Statistical significance for genomewide studies
JD Storey et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
LINE-1 preTa elements in the human genome
AH Salem et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Expression of a human endogenous retrovirus, HERV-K, in the blood cells of leukemia patients
S Depil et al.
LEUKEMIA (2002)
Initial sequencing and analysis of the human genome
ES Lander et al.
NATURE (2001)