相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。The fossilized mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate
Aaron O. Richardson et al.
BMC BIOLOGY (2013)
Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing
Jin Zhang et al.
BMC PLANT BIOLOGY (2013)
Horizontal Transfer of DNA from the Mitochondrial to the Plastid Genome and Its Subsequent Evolution in Milkweeds (Apocynaceae)
Shannon C. K. Straub et al.
GENOME BIOLOGY AND EVOLUTION (2013)
CDD: conserved domains and protein three-dimensional structure
Aron Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2013)
OrganellarGenomeDRAW-a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets
Marc Lohse et al.
NUCLEIC ACIDS RESEARCH (2013)
Horizontal Transfer of Entire Genomes via Mitochondrial Fusion in the Angiosperm Amborella
Danny W. Rice et al.
SCIENCE (2013)
De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome
Massimo Iorizzo et al.
BMC PLANT BIOLOGY (2012)
Evidence against Equimolarity of Large Repeat Arrangements and a Predominant Master Circle Structure of the Mitochondrial Genome from a Monkeyflower (Mimulus guttatus) Lineage with Cryptic CMS
Jeffrey P. Mower et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Hybrid error correction and de novo assembly of single-molecule sequencing reads
Sergey Koren et al.
NATURE BIOTECHNOLOGY (2012)
Phytozome: a comparative platform for green plant genomics
David M. Goodstein et al.
NUCLEIC ACIDS RESEARCH (2012)
Primer3-new capabilities and interfaces
Andreas Untergasser et al.
NUCLEIC ACIDS RESEARCH (2012)
Rapid Evolution of Enormous, Multichromosomal Genomes in Flowering Plant Mitochondria with Exceptionally High Mutation Rates
Daniel B. Sloan et al.
PLOS BIOLOGY (2012)
Determination of the melon chloroplast and mitochondrial genome sequences reveals that the largest reported mitochondrial genome in plants contains a significant amount of DNA having a nuclear origin
Luis Rodriguez-Moreno et al.
BMC GENOMICS (2011)
Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus
Robert K. Jansen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
The Mitochondrial Genome of the Legume Vigna radiata and the Analysis of Recombination across Short Mitochondrial Repeats
Andrew J. Alverson et al.
PLOS ONE (2011)
Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia
Daniel B. Sloan et al.
BMC EVOLUTIONARY BIOLOGY (2010)
EST analysis reveals putative genes involved in glycyrrhizin biosynthesis
Ying Li et al.
BMC GENOMICS (2010)
Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)
Andrew J. Alverson et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
APPLICATIONS OF NEXT-GENERATION SEQUENCING Sequencing technologies - the next generation
Michael L. Metzker
NATURE REVIEWS GENETICS (2010)
Recombination and the maintenance of plant organelle genome stability
Alexandre Marechal et al.
NEW PHYTOLOGIST (2010)
The Genetic Map of Artemisia annua L. Identifies Loci Affecting Yield of the Antimalarial Drug Artemisinin
Ian A. Graham et al.
SCIENCE (2010)
Next-Generation Sequencing: From Basic Research to Diagnostics
Karl V. Voelkerding et al.
CLINICAL CHEMISTRY (2009)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
Comparative Analysis of Structural Diversity and Sequence Evolution in Plant Mitochondrial Genes Transferred to the Nucleus
Shao-Lun Liu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
The challenges of sequencing by synthesis
Carl W. Fuller et al.
NATURE BIOTECHNOLOGY (2009)
The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments
Jeffrey P. Mower
NUCLEIC ACIDS RESEARCH (2009)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Frequent, phylogenetically local horizontal transfer of the cox1 group I intron in flowering plant mitochondria
M. Virginia Sanchez-Puerta et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Reevaluation of the cox1 group I intron in Araceae and angiosperms indicates a history dominated by loss rather than horizontal transfer
Natalie Cusimano et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Loss of the rp132 gene from the chloroplast genome and subsequent acquisition of a preexisting transit peptide within the nuclear gene in Populus
Minoru Ueda et al.
GENE (2007)
Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA
Daryi Wang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Plant mitochondrial recombination surveillance requires unusual RecA and MutS homologs
Vikas Shedge et al.
PLANT CELL (2007)
Locating proteins in the cell using TargetP, SignalP and related tools
Olof Emanuelsson et al.
NATURE PROTOCOLS (2007)
Phytochemical, pharmacological and ethnobotanical studies of Rhazya stricta Decne.
Syed Abdullah Gilani et al.
PHYTOTHERAPY RESEARCH (2007)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
Oleksiy Kohany et al.
BMC BIOINFORMATICS (2006)
Pervasive survival of expressed mitochondrial rps14 pseudogenes in grasses and their relatives for 80 million years following three functional transfers to the nucleus
Han Chuan Ong et al.
BMC EVOLUTIONARY BIOLOGY (2006)
Relaxed transcription in Arabidopsis mitochondria is counterbalanced by RNA stability control mediated by polyadenylation and polynucleotide phosphorylase
S Holec et al.
MOLECULAR AND CELLULAR BIOLOGY (2006)
Evolutionary transfers of mitochondrial genes to the nucleus in the Populus lineage and coexpression of nuclear and mitochondrial Sdh4 genes
Catherine Choi et al.
NEW PHYTOLOGIST (2006)
The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants
Y Sugiyama et al.
MOLECULAR GENETICS AND GENOMICS (2005)
Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome
Y Ogihara et al.
NUCLEIC ACIDS RESEARCH (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Endosymbiotic gene transfer: Organelle genomes forge eukaryotic chromosomes
JN Timmis et al.
NATURE REVIEWS GENETICS (2004)
Interactions of mitochondrial and nuclear genes that affect male gametophyte development
MR Hanson et al.
PLANT CELL (2004)
Automatic annotation of organellar genomes with DOGMA
SK Wyman et al.
BIOINFORMATICS (2004)
Distribution of introns in the mitochondrial gene nad1 in land plants:: phylogenetic and molecular evolutionary implications
O Dombrovska et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2004)
Predotar:: A tool for rapidly screening proteomes for N-terminal targeting sequences
I Small et al.
PROTEOMICS (2004)
Evolution of mitochondrial gene content: gene loss and transfer to the nucleus
KL Adams et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2003)
CDART: Protein homology by domain architecture
LY Geer et al.
GENOME RESEARCH (2002)
Punctuated evolution of mitochondrial gene content: High and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution
KL Adams et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
A Krogh et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNACys(GCA)
T Kubo et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
