相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。GO-Module: functional synthesis and improved interpretation of Gene Ontology patterns
Xinan Yang et al.
BIOINFORMATICS (2011)
The role of duplications in the evolution of genomes highlights the need for evolutionary-based approaches in comparative genomics
Anthony Levasseur et al.
BIOLOGY DIRECT (2011)
Experimental design and statistical rigor in phylogenomics of horizontal and endosymbiotic gene transfer
John W. Stiller
BMC EVOLUTIONARY BIOLOGY (2011)
Genome builders face the competition
Erika Check Hayden
NATURE (2011)
A decade's perspective on DNA sequencing technology
Elaine R. Mardis
NATURE (2011)
Error and Error Mitigation in Low-Coverage Genome Assemblies
Melissa J. Hubisz et al.
PLOS ONE (2011)
A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives
Julie D. Thompson et al.
PLOS ONE (2011)
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
Vincent Ranwez et al.
PLOS ONE (2011)
Estimating the timing of early eukaryotic diversification with multigene molecular clocks
Laura Wegener Parfrey et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
On the last common ancestor and early evolution of eukaryotes: reconstructing the history of mitochondrial ribosomes
Elie Desmond et al.
RESEARCH IN MICROBIOLOGY (2011)
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
Herve Philippe et al.
PLOS BIOLOGY (2011)
Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection
Omer Gokcumen et al.
GENOME BIOLOGY (2011)
Phylogenomics with incomplete taxon coverage: the limits to inference
Michael J. Sanderson et al.
BMC EVOLUTIONARY BIOLOGY (2010)
Assessment of orthologous splicing isoforms in human and mouse orthologous genes
Federico Zambelli et al.
BMC GENOMICS (2010)
Dealing with missing values in large-scale studies: microarray data imputation and beyond
Tero Aittokallio
BRIEFINGS IN BIOINFORMATICS (2010)
Alternative splicing: global insights
Martina Hallegger et al.
FEBS JOURNAL (2010)
Genome assembly quality: Assessment and improvement using the neutral indel model
Stephen Meader et al.
GENOME RESEARCH (2010)
Different Phylogenomic Approaches to Resolve the Evolutionary Relationships among Model Fish Species
Enrico Negrisolo et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Dogs, cats, and kin: A molecular species-level phylogeny of Carnivora
Ingi Agnarsson et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)
AmiGO: online access to ontology and annotation data
Seth Carbon et al.
BIOINFORMATICS (2009)
Identification of mammalian orthologs using local synteny
Jin Jun et al.
BMC GENOMICS (2009)
The effect of sequencing errors on metagenomic gene prediction
Katharina J. Hoff
BMC GENOMICS (2009)
Evolution of gene function and regulatory control after whole-genome duplication: Comparative analyses in vertebrates
Karin S. Kassahn et al.
GENOME RESEARCH (2009)
Adaptive evolution of young gene duplicates in mammals
Mira V. Han et al.
GENOME RESEARCH (2009)
The difficulty of avoiding false positives in genome scans for natural selection
Swapan Mallick et al.
GENOME RESEARCH (2009)
Duplication Mechanism and Disruptions in Flanking Regions Determine the Fate of Mammalian Gene Duplicates
Jin Jun et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2009)
Mapping the Tree of Life: Progress and Prospects
Norman R. Pace
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2009)
How confident can we be that orthologs are similar, but paralogs differ?
Romain A. Studer et al.
TRENDS IN GENETICS (2009)
Identifying protein-coding genes in genomic sequences
Jennifer Harrow et al.
GENOME BIOLOGY (2009)
Syntenator: Multiple gene order alignments with a gene-specific scoring function
Christian Roedelsperger et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2008)
Identification and correction of abnormal, incomplete and mispredicted proteins in public databases
Alinda Nagy et al.
BMC BIOINFORMATICS (2008)
Recent developments in the MAFFT multiple sequence alignment program
Kazutaka Katoh et al.
BRIEFINGS IN BIOINFORMATICS (2008)
Human genes involved in copy number variation: mechanisms of origin, functional effects and implications for disease
A. J. de Smith et al.
CYTOGENETIC AND GENOME RESEARCH (2008)
Estimation of Phylogenetic Inconsistencies in the Three Domains of Life
Victor Soria-Carrasco et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Steady progress and recent breakthroughs in the accuracy of automated genome annotation
Michael R. Brent
NATURE REVIEWS GENETICS (2008)
Turning a hobby into a job: How duplicated genes find new functions
Gavin C. Conant et al.
NATURE REVIEWS GENETICS (2008)
Designating eukaryotic orthology via processed transcription units
Meng-Ru Ho et al.
NUCLEIC ACIDS RESEARCH (2008)
Bioinformatics challenges of new sequencing technology
Mihai Pop et al.
TRENDS IN GENETICS (2008)
Consequences of genome duplication
Marie Semon et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2007)
More genes underwent positive selection in chimpanzee evolution than in human evolution
Margaret A. Bakewell et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences
Christophe Dessimoz et al.
BMC BIOINFORMATICS (2006)
Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human
Leo Goodstadt et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
MACSIMS: multiple alignment of complete sequences information management system
Julie D. Thompson et al.
BMC BIOINFORMATICS (2006)
Diagnosing duplications - can it be done?
D Durand et al.
TRENDS IN GENETICS (2006)
Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data
F Boyer et al.
BIOINFORMATICS (2005)
LEON: multiple aLignment Evaluation of Neighbours
JD Thompson et al.
NUCLEIC ACIDS RESEARCH (2004)
RASCAL: rapid scanning and correction of multiple sequence alignments
JD Thompson et al.
BIOINFORMATICS (2003)
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
M Remm et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches
JD Thompson et al.
NUCLEIC ACIDS RESEARCH (2000)
Ballast: Blast postprocessing based on locally conserved segments
F Plewniak et al.
BIOINFORMATICS (2000)