相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Microbial Dysbiosis Is Associated with Human Breast Cancer
Caiyun Xuan et al.
PLOS ONE (2014)
Common Contaminants in Next-Generation Sequencing That Hinder Discovery of Low-Abundance Microbes
Martin Laurence et al.
PLOS ONE (2014)
APPLICATION OF SPECIAL OLIGOTROPHIC MEDIA FOR CULTIVATION OF BACTERIAL COMMUNITIES ORIGINATED FROM ULTRAPURE WATER
Zsuzsa Keki et al.
ACTA MICROBIOLOGICA ET IMMUNOLOGICA HUNGARICA (2013)
Comparison of the Respiratory Microbiome in Healthy Nonsmokers and Smokers
Alison Morris et al.
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2013)
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
James J. Kozich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Pyrosequencing analysis of the human microbiota of healthy Chinese undergraduates
Zongxin Ling et al.
BMC GENOMICS (2013)
Longitudinal analysis of the lung microbiome in lung transplantation
Klaudyna Borewicz et al.
FEMS MICROBIOLOGY LETTERS (2013)
New perspectives on viable microbial communities in low-biomass cleanroom environments
Parag Vaishampayan et al.
ISME JOURNAL (2013)
A global survey of the bacteria within earthworm nephridia
Seana K. Davidson et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2013)
Sequence-Based Discovery of Bradyrhizobium enterica in Cord Colitis Syndrome
Ami S. Bhatt et al.
NEW ENGLAND JOURNAL OF MEDICINE (2013)
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
Anna Klindworth et al.
NUCLEIC ACIDS RESEARCH (2013)
Detection of Transient Bacteraemia following Dental Extractions by 16S rDNA Pyrosequencing: A Pilot Study
Alfonso Benitez-Paez et al.
PLOS ONE (2013)
Brain Microbial Populations in HIV/AIDS: α-Proteobacteria Predominate Independent of Host Immune Status
William G. Branton et al.
PLOS ONE (2013)
Bacterial Community Profiling of Milk Samples as a Means to Understand Culture-Negative Bovine Clinical Mastitis
Joanna S. Kuehn et al.
PLOS ONE (2013)
Subglacial Lake Vostok (Antarctica) Accretion Ice Contains a Diverse Set of Sequences from Aquatic, Marine and Sediment-Inhabiting Bacteria and Eukarya
Yury M. Shtarkman et al.
PLOS ONE (2013)
Mining RNA-Seq Data for Infections and Contaminations
Thomas Bonfert et al.
PLOS ONE (2013)
Patent Human Infections with the Whipworm, Trichuris trichiura, Are Not Associated with Alterations in the Faecal Microbiota
Philip Cooper et al.
PLOS ONE (2013)
Microbiome of the upper troposphere: Species composition and prevalence, effects of tropical storms, and atmospheric implications
Natasha DeLeon-Rodriguez et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Genome-wide mapping of gene-microbiota interactions in susceptibility to autoimmune skin blistering
Girish Srinivas et al.
NATURE COMMUNICATIONS (2013)
Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data
A. Murat Eren et al.
METHODS IN ECOLOGY AND EVOLUTION (2013)
The ignored diversity: complex bacterial communities in intensive care units revealed by 16S pyrosequencing
Lisa Oberauner et al.
SCIENTIFIC REPORTS (2013)
Bacterial communities and species-specific associations with the mucus of Brazilian coral species
Camila Carlos et al.
SCIENTIFIC REPORTS (2013)
Metagenomic analysis of the pinewood nematode microbiome reveals a symbiotic relationship critical for xenobiotics degradation
Xin-Yue Cheng et al.
SCIENTIFIC REPORTS (2013)
Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation
Leopoldo N. Segal et al.
MICROBIOME (2013)
Co-habiting amphibian species harbor unique skin bacterial communities in wild populations
Valerie J. McKenzie et al.
ISME JOURNAL (2012)
Multiple Sources of Contamination in Samples from Patients Reported to Have XMRV Infection
Mary F. Kearney et al.
PLOS ONE (2012)
A Longitudinal Study of Streptococcus pneumoniae Carriage in a Cohort of Infants and Their Mothers on the Thailand-Myanmar Border
Paul Turner et al.
PLOS ONE (2012)
Development of an ethidium monoazide-enhanced internally controlled universal 16S rDNA real-time polymerase chain reaction assay for detection of bacterial contamination in platelet concentrates
Poorvi Patel et al.
TRANSFUSION (2012)
Midgut Microbiota of the Malaria Mosquito Vector Anopheles gambiae and Interactions with Plasmodium falciparum Infection
Anne Boissiere et al.
PLOS PATHOGENS (2012)
BACTERIAL COMMUNITIES IN AN ULTRAPURE WATER CONTAINING STORAGE TANK OF A POWER PLANT
Veronika Bohus et al.
ACTA MICROBIOLOGICA ET IMMUNOLOGICA HUNGARICA (2011)
Removing Noise From Pyrosequenced Amplicons
Christopher Quince et al.
BMC BIOINFORMATICS (2011)
Involvement of tissue bacteria in the onset of diabetes in humans: evidence for a concept
J. Amar et al.
DIABETOLOGIA (2011)
Adaptive seeds tame genomic sequence comparison
Szymon M. Kielbasa et al.
GENOME RESEARCH (2011)
Integrative analysis of environmental sequences using MEGAN4
Daniel H. Huson et al.
GENOME RESEARCH (2011)
Bayesian community-wide culture-independent microbial source tracking
Dan Knights et al.
NATURE METHODS (2011)
An Efficient Strategy for Broad-Range Detection of Low Abundance Bacteria without DNA Decontamination of PCR Reagents
Shy-Shin Chang et al.
PLOS ONE (2011)
Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
Patrick D. Schloss et al.
PLOS ONE (2011)
Diversity of Bacteria at Healthy Human Conjunctiva
Qunfeng Dong et al.
INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE (2011)
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
Victor Kunin et al.
ENVIRONMENTAL MICROBIOLOGY (2010)
An Efficient Multistrategy DNA Decontamination Procedure of PCR Reagents for Hypersensitive PCR Applications
Sophie Champlot et al.
PLOS ONE (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples
James Robert White et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Reagent decontamination to eliminate false-positives in Escherichia coli qPCR
Sarah S. Silkie et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2008)
Using Ancient DNA Analysis in Palaeopathology: A Critical Analysis of Published Papers, with Recommendations for Future Work
C. Roberts et al.
INTERNATIONAL JOURNAL OF OSTEOARCHAEOLOGY (2008)
Removal of contaminating DNA from polymerase chain reaction using ethidium monoazide
Andreas Rueckert et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2007)
The application of ultraviolet irradiation to exogenous sources of DNA in plasticware and water for the amplification of low copy number DNA
Jeannie Tamariz et al.
JOURNAL OF FORENSIC SCIENCES (2006)
DNA extraction from low-biomass carbonate rock: An improved method with reduced contamination and the low-biomass contaminant database
H. A. Barton et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2006)
Sensitive, real-time PCR detects low-levels of contamination by Legionella pneumophila in commercial reagents
Hua Shen et al.
MOLECULAR AND CELLULAR PROBES (2006)
Removal of contaminating DNA from commercial nucleic acid extraction kit reagents
T Mohammadi et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2005)
Isolation of nucleic acids and cultures from fossil ice and permafrost
E Willerslev et al.
TRENDS IN ECOLOGY & EVOLUTION (2004)
Microbial monitoring of spacecraft and associated environments
MT La Duc et al.
MICROBIAL ECOLOGY (2004)
Presence of bacterial phage-like DNA sequences in commercial Taq DNA polymerase reagents
T Newsome et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2004)
Optimization of real-time PCR assay for rapid and sensitive detection of eubacterial 16S ribosomal DNA in platelet concentrates
T Mohammadi et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2003)
DNase pretreatment of master mix reagents improves the validity of universal 16S rRNA gene PCR results
A Heininger et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2003)
Identification of mixed bacterial DNA contamination in broad-range PCR amplification of 16S rDNA V1 and V3 variable regions by pyrosequencing of cloned amplicons
N Grahn et al.
FEMS MICROBIOLOGY LETTERS (2003)
Comparison of different decontamination methods for reagents to detect low concentrations of bacterial 16S DNA by real-time-PCR
S Klaschik et al.
MOLECULAR BIOTECHNOLOGY (2002)
Survival and nutritional requirements of three bacteria isolated from ultrapure water
MB McAlister et al.
JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY (2002)
Analysis of bacteria contaminating ultrapure water in industrial systems
LA Kulakov et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)