4.8 Review

Microarrays, deep sequencing and the true measure of the transcriptome

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

The developmental transcriptome of Drosophila melanogaster

Brenton R. Graveley et al.

NATURE (2011)

Article Biochemical Research Methods

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

James H. Bullard et al.

BMC BIOINFORMATICS (2010)

Article Biotechnology & Applied Microbiology

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

Ashish Agarwal et al.

BMC GENOMICS (2010)

Article Genetics & Heredity

Statistical Design and Analysis of RNA Sequencing Data

Paul L. Auer et al.

GENETICS (2010)

Article Biochemistry & Molecular Biology

Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments

Hugues Richard et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Biases in Illumina transcriptome sequencing caused by random hexamer priming

Kasper D. Hansen et al.

NUCLEIC ACIDS RESEARCH (2010)

Editorial Material Biotechnology & Applied Microbiology

The missing graphical user interface for genomics

Michael C. Schatz

GENOME BIOLOGY (2010)

Article Biotechnology & Applied Microbiology

Modeling non-uniformity in short-read rates in RNA-Seq data

Jun Li et al.

GENOME BIOLOGY (2010)

Article Biochemical Research Methods

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell et al.

BIOINFORMATICS (2009)

Article Biotechnology & Applied Microbiology

Estimating accuracy of RNA-Seq and microarrays with proteomics

Xing Fu et al.

BMC GENOMICS (2009)

Article Multidisciplinary Sciences

Unlocking the secrets of the genome

Susan E. Celniker et al.

NATURE (2009)

Review Genetics & Heredity

RNA-Seq: a revolutionary tool for transcriptomics

Zhong Wang et al.

NATURE REVIEWS GENETICS (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Genetics & Heredity

Next-Generation DNA Sequencing Methods

Elaine R. Mardis

Annual Review of Genomics and Human Genetics (2008)

Article Biochemistry & Molecular Biology

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

Ryan Lister et al.

Article Biochemistry & Molecular Biology

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

John C. Marioni et al.

GENOME RESEARCH (2008)

Article Biochemical Research Methods

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Ali Mortazavi et al.

NATURE METHODS (2008)

Article Multidisciplinary Sciences

Constraint and turnover in sex-biased gene expression in the genus Drosophila

Yu Zhang et al.

NATURE (2007)

Article Multidisciplinary Sciences

RNA maps reveal new RNA classes and a possible function for pervasive transcription

Philipp Kapranov et al.

SCIENCE (2007)

Article Biology

How high is the level of technical noise in microarray data?

Lev Klebanov et al.

BIOLOGY DIRECT (2007)

Article Biochemical Research Methods

Sebida: a database for the functional and evolutionary analysis of genes with sex-biased expression

Florian Gnad et al.

BIOINFORMATICS (2006)

Article Developmental Biology

The expression profile of purified Drosophila germline stem cells

T Kai et al.

DEVELOPMENTAL BIOLOGY (2005)

Article Biochemical Research Methods

Multiple-laboratory comparison of microarray platforms

RA Irizarry et al.

NATURE METHODS (2005)

Article Biochemistry & Molecular Biology

Evaluation of gene expression measurements from commercial microarray platforms

PK Tan et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Chemistry, Analytical

Effects of atmospheric ozone on microarray data quality

TL Fare et al.

ANALYTICAL CHEMISTRY (2003)

Article Mathematical & Computational Biology

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

RA Irizarry et al.

BIOSTATISTICS (2003)

Article Multidisciplinary Sciences

Gene expression during the life cycle of Drosophila melanogaster

MN Arbeitman et al.

SCIENCE (2002)

Article Multidisciplinary Sciences

Genetic dissection of transcriptional regulation in budding yeast

RB Brem et al.

SCIENCE (2002)

Review Multidisciplinary Sciences

The sequence of the human genome

JC Venter et al.

SCIENCE (2001)

Review Multidisciplinary Sciences

The genome sequence of Drosophila melanogaster

MD Adams et al.

SCIENCE (2000)