相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks
Fabio Gori et al.
BIOINFORMATICS (2011)
Flexible taxonomic assignment of ambiguous sequencing reads
Jose C. Clemente et al.
BMC BIOINFORMATICS (2011)
PhymmBL expanded: confidence scores, custom databases, parallelization and more
Arthur Brady et al.
NATURE METHODS (2011)
Treephyler: fast taxonomic profiling of metagenomes
Fabian Schreiber et al.
BIOINFORMATICS (2010)
Identifying biologically relevant differences between metagenomic communities
Donovan H. Parks et al.
BIOINFORMATICS (2010)
Distinguishing Microbial Genome Fragments Based on Their Composition: Evolutionary and Comparative Genomic Perspectives
Scott C. Perry et al.
GENOME BIOLOGY AND EVOLUTION (2010)
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin et al.
NATURE (2010)
Phylogenetic Diversity and Metabolic Potential Revealed in a Glacier Ice Metagenome
Carola Simon et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
Naryttza N. Diaz et al.
BMC BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
A core gut microbiome in obese and lean twins
Peter J. Turnbaugh et al.
NATURE (2009)
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
Dongying Wu et al.
NATURE (2009)
Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models
Arthur Brady et al.
NATURE METHODS (2009)
Database resources of the National Center for Biotechnology Information
Eric W. Sayers et al.
NUCLEIC ACIDS RESEARCH (2009)
NCBI Reference Sequences: current status, policy and new initiatives
Kim D. Pruitt et al.
NUCLEIC ACIDS RESEARCH (2009)
Phylogenetic classification of short environmental DNA fragments
Lutz Krause et al.
NUCLEIC ACIDS RESEARCH (2008)
MetaSim-A Sequencing Simulator for Genomics and Metagenomics
Daniel C. Richter et al.
PLOS ONE (2008)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
MEGAN analysis of metagenomic data
Daniel H. Huson et al.
GENOME RESEARCH (2007)
Accurate phylogenetic classification of variable-length DNA fragments
Alice Carolyn McHardy et al.
NATURE METHODS (2007)
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
Hector Garcia Martin et al.
NATURE BIOTECHNOLOGY (2006)
Comparative metagenomics of microbial communities
SG Tringe et al.
SCIENCE (2005)
Environmental genome shotgun sequencing of the Sargasso Sea
JC Venter et al.
SCIENCE (2004)
Community structure and metabolism through reconstruction of microbial genomes from the environment
GW Tyson et al.
NATURE (2004)
Capturing whole-genome characteristics in short sequences using a naive Bayesian classifier
R Sandberg et al.
GENOME RESEARCH (2001)
Bacterial rhodopsin:: Evidence for a new type of phototrophy in the sea
O Béjà et al.
SCIENCE (2000)