期刊
BMC BIOINFORMATICS
卷 9, 期 -, 页码 -出版社
BMC
DOI: 10.1186/1471-2105-9-399
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-
类别
资金
- NIH [GM080223, HG003053]
Background: Biological pathways are a useful abstraction of biological concepts, and software tools to deal with pathway diagrams can help biological research. PathVisio is a new visualization tool for biological pathways that mimics the popular GenMAPP tool with a completely new Java implementation that allows better integration with other open source projects. The GenMAPP MAPP file format is replaced by GPML, a new XML file format that provides seamless exchange of graphical pathway information among multiple programs. Results: PathVisio can be combined with other bioinformatics tools to open up three possible uses: visual compilation of biological knowledge, interpretation of high-throughput expression datasets, and computational augmentation of pathways with interaction information. PathVisio is open source software and available at http://www.pathvisio.org. Conclusion: PathVisio is a graphical editor for biological pathways, with flexibility and ease of use as primary goals.
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