4.4 Review

Bioinformatic approaches for the structure and function of membrane proteins

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Transmembrane helices predicted at 95% accuracy

Burkhard Rost et al.

PROTEIN SCIENCE (2010)

Article Biochemistry & Molecular Biology

TOPCONS: consensus prediction of membrane protein topology

Andreas Bernsel et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

MemBrain: Improving the Accuracy of Predicting Transmembrane Helices

Hongbin Shen et al.

PLOS ONE (2008)

Article Multidisciplinary Sciences

Prediction of membrane-protein topology from first principles

Andreas Bernsel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

Common occurrence of internal repeat symmetry in membrane proteins

Sungwon Choi et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Predicting allosteric communication in myosin via a pathway of conserved residues

Susan Tang et al.

JOURNAL OF MOLECULAR BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Transmembrane domain of myelin protein zero can form dimers: Possible implications for myelin construction

Megan L. Plotkowski et al.

BIOCHEMISTRY (2007)

Article Chemistry, Physical

Structural disorder of the CD3ξ transmembrane domain studied with 2D IR spectroscopy and molecular dynamics simulations

Prabuddha Mukherjee et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2006)

Article Biochemistry & Molecular Biology

Quasi-symmetry in the cryo-EM structure of EmrE provides the key to modeling its transmembrane domain

Sarel J. Fleishman et al.

JOURNAL OF MOLECULAR BIOLOGY (2006)

Article Biochemical Research Methods

ZPRED:: Predicting the distance to the membrane center for residues in α-helical membrane proteins

Erik Granseth et al.

BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

Picosecond dynamics of a membrane protein revealed by 2D IR

P Mukherjee et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Identification and evolution of dual-topology membrane proteins

M Rapp et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)

Review Biochemistry & Molecular Biology

Transmembrane protein structures without X-rays

SJ Fleishman et al.

TRENDS IN BIOCHEMICAL SCIENCES (2006)

Review Multidisciplinary Sciences

Solving the membrane protein folding problem

JU Bowie

NATURE (2005)

Article Multidisciplinary Sciences

Transmembrane glycine zippers: Physiological and pathological roles in membrane proteins

S Kim et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemical Research Methods

An HMM posterior decoder for sequence feature prediction that includes homology information

L Käll et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

Transmembrane helix prediction: a comparative evaluation and analysis

JM Cuthbertson et al.

PROTEIN ENGINEERING DESIGN & SELECTION (2005)

Article Multidisciplinary Sciences

Transmembrane protein domains rarely use covalent domain recombination as an evolutionary mechanism

Y Liu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biology

ConPred_elite: a highly reliable approach to transmembrane topology prediction

JX Xia et al.

COMPUTATIONAL BIOLOGY AND CHEMISTRY (2004)

Article Multidisciplinary Sciences

The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors

S Yohannan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Review Chemistry, Multidisciplinary

Structure determination of membrane proteins by NMR spectroscopy

SJ Opella et al.

CHEMICAL REVIEWS (2004)

Article Biochemistry & Molecular Biology

The progress of membrane protein structure determination

SH White

PROTEIN SCIENCE (2004)

Article Biochemistry & Molecular Biology

ConPred II: a consensus prediction method for obtaining transmembrane topology models with high reliability

M Arai et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Internal gene duplication in the evolution of prokaryotic transmembrane proteins

T Shimizu et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

A combined transmembrane topology and signal peptide prediction method

L Käll et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biophysics

Site-specific dichroism analysis utilizing transmission FTIR

E Arbely et al.

BIOPHYSICAL JOURNAL (2003)

Article Biochemistry & Molecular Biology

STRING: a database of predicted functional associations between proteins

C von Mering et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

Evolutionarily conserved networks of residues mediate allosteric communication in proteins

GM Suel et al.

NATURE STRUCTURAL BIOLOGY (2003)

Article Biochemistry & Molecular Biology

Prediction of partial membrane protein topologies using a consensus approach

J Nilsson et al.

PROTEIN SCIENCE (2002)

Review Biochemistry & Molecular Biology

Transmembrane helix predictions revisited

CP Chen et al.

PROTEIN SCIENCE (2002)

Article Biochemical Research Methods

The presence of signal peptide significantly affects transmembrane topology prediction

DM Lao et al.

BIOINFORMATICS (2002)

Article Biophysics

Uniformity, ideality, and hydrogen bonds in transmembrane α-helices

S Kim et al.

BIOPHYSICAL JOURNAL (2002)

Article Biotechnology & Applied Microbiology

The druggable genome

AL Hopkins et al.

NATURE REVIEWS DRUG DISCOVERY (2002)

Article Biochemistry & Molecular Biology

Conformational dynamics of helix S6 from Shaker potassium channel: Simulation studies

JN Bright et al.

BIOPOLYMERS (2002)

Article Chemistry, Multidisciplinary

Basic charge clusters and predictions of membrane protein topology

D Juretic et al.

JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES (2002)

Article Biochemistry & Molecular Biology

Structure of the transmembrane region of the M2 protein H+ channel

JF Wang et al.

PROTEIN SCIENCE (2001)

Review Biochemistry & Molecular Biology

The hunchback and its neighbours: proline as an environmental modulator

H Reiersen et al.

TRENDS IN BIOCHEMICAL SCIENCES (2001)

Article Biochemistry & Molecular Biology

Energetics, stability, and prediction of transmembrane helices

S Jayasinghe et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)

Article Biochemical Research Methods

The HMMTOP transmembrane topology prediction server

GE Tusnády et al.

BIOINFORMATICS (2001)

Review Biochemistry & Molecular Biology

How membranes shape protein structure

SH White et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2001)

Article Biochemistry & Molecular Biology

Proline-induced hinges in transmembrane helices: Possible roles in ion channel gating

DP Tieleman et al.

PROTEINS-STRUCTURE FUNCTION AND GENETICS (2001)

Article Chemistry, Multidisciplinary

Complete cross-validation and R-factor calculation of a solid-state NMR derived structure

S Kim et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2001)

Article Biochemical Research Methods

Evaluation of methods for the prediction of membrane spanning regions

S Möller et al.

BIOINFORMATICS (2001)

Article Biochemistry & Molecular Biology

MPtopo: A database of membrane protein topology

S Jayasinghe et al.

PROTEIN SCIENCE (2001)

Article Biochemistry & Molecular Biology

Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes

A Krogh et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)

Article Biochemistry & Molecular Biology

Consensus predictions of membrane protein topology

J Nilsson et al.

FEBS LETTERS (2000)

Article Biochemistry & Molecular Biology

The Protein Data Bank

HM Berman et al.

NUCLEIC ACIDS RESEARCH (2000)