Draft Genome Sequence of Thermus sp. Isolate 2.9, Obtained from a Hot Water Spring Located in Salta, Argentina

Thermus sp. isolate 2.9 was obtained from a hot water spring in Salta, Argentina. Here, we report the draft genome sequence (2,485,434 bp) of this isolate, which consists of 11 scaffolds of > 10 kbp and 2,719 protein-coding sequences.