相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
GAGE-B: an evaluation of genome assemblers for bacterial organisms
Tanja Magoc et al.
BIOINFORMATICS (2013)
Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass
Charlotte M. Wilson et al.
BIOTECHNOLOGY FOR BIOFUELS (2013)
Efficient and accurate whole genome assembly and methylome profiling of E-coli
Jason G. Powers et al.
BMC GENOMICS (2013)
Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools
Veljo Kisand et al.
BMC GENOMICS (2013)
NADP-Specific Electron-Bifurcating [FeFe]-Hydrogenase in a Functional Complex with Formate Dehydrogenase in Clostridium autoethanogenum Grown on CO
Shuning Wang et al.
JOURNAL OF BACTERIOLOGY (2013)
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
Chen-Shan Chin et al.
NATURE METHODS (2013)
Sequence assembly demystified
Niranjan Nagarajan et al.
NATURE REVIEWS GENETICS (2013)
Clostridium difficile Is an Autotrophic Bacterial Pathogen
Michael Koepke et al.
PLOS ONE (2013)
Reducing assembly complexity of microbial genomes with single-molecule sequencing
Sergey Koren et al.
GENOME BIOLOGY (2013)
CGAL: computing genome assembly likelihoods
Atif Rahman et al.
GENOME BIOLOGY (2013)
REAPR: a universal tool for genome assembly evaluation
Martin Hunt et al.
GENOME BIOLOGY (2013)
Complete Genome Sequence of the Solvent Producer Clostridium saccharobutylicum NCP262 (DSM 13864)
Anja Poehlein et al.
GENOME ANNOUNCEMENTS (2013)
A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
Michael A. Quail et al.
BMC GENOMICS (2012)
Clostridia: the importance of their exceptional substrate and metabolite diversity for biofuel and biorefinery applications
Bryan P. Tracy et al.
CURRENT OPINION IN BIOTECHNOLOGY (2012)
GAGE: A critical evaluation of genome assemblies and assembly algorithms
Steven L. Salzberg et al.
GENOME RESEARCH (2012)
Draft Genome Sequence of Rhizobium sp Strain PDO1-076, a Bacterium Isolated from Populus deltoides
Steven D. Brown et al.
JOURNAL OF BACTERIOLOGY (2012)
Draft Genome Sequences for Clostridium thermocellum Wild-Type Strain YS and Derived Cellulose Adhesion-Defective Mutant Strain AD2
Steven D. Brown et al.
JOURNAL OF BACTERIOLOGY (2012)
Draft Genome Sequences for Two Metal-Reducing Pelosinus fermentans Strains Isolated from a Cr(VI)-Contaminated Site and for Type Strain R7
Steven D. Brown et al.
JOURNAL OF BACTERIOLOGY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Essential Features and Rational Design of CRISPR RNAs that Function with the Cas RAMP Module Complex to Cleave RNAs
Caryn R. Hale et al.
MOLECULAR CELL (2012)
Hybrid error correction and de novo assembly of single-molecule sequencing reads
Sergey Koren et al.
NATURE BIOTECHNOLOGY (2012)
A hybrid approach for the automated finishing of bacterial genomes
Ali Bashir et al.
NATURE BIOTECHNOLOGY (2012)
Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis
Hagen Richter et al.
NUCLEIC ACIDS RESEARCH (2012)
Feature-by-Feature - Evaluating De Novo Sequence Assembly
Francesco Vezzi et al.
PLOS ONE (2012)
The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation
Konstantinos Mavromatis et al.
PLOS ONE (2012)
Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology
Adam C. English et al.
PLOS ONE (2012)
CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation
Devaki Bhaya et al.
ANNUAL REVIEW OF GENETICS, VOL 45 (2011)
2,3-Butanediol Production by Acetogenic Bacteria, an Alternative Route to Chemical Synthesis, Using Industrial Waste Gas
Michael Koepke et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018
Shiyuan Hu et al.
BMC GENOMICS (2011)
Fermentative production of ethanol from carbon monoxide
Michael Koepke et al.
CURRENT OPINION IN BIOTECHNOLOGY (2011)
Complete Genome Sequence of the Cellulolytic Thermophile Clostridium thermocellum DSM1313
Lawrence Feinberg et al.
JOURNAL OF BACTERIOLOGY (2011)
Complete Genome Sequence of Clostridium acetobutylicum DSM 1731, a Solvent-Producing Strain with Multireplicon Genome Architecture
Guanhui Bao et al.
JOURNAL OF BACTERIOLOGY (2011)
Evolution and classification of the CRISPR-Cas systems
Kira S. Makarova et al.
NATURE REVIEWS MICROBIOLOGY (2011)
PHAST: A Fast Phage Search Tool
You Zhou et al.
NUCLEIC ACIDS RESEARCH (2011)
CRISPR Inhibition of Prophage Acquisition in Streptococcus pyogenes
Takashi Nozawa et al.
PLOS ONE (2011)
Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum
Steven D. Brown et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Genome Sequence of the Cellulosome-Producing Mesophilic Organism Clostridium cellulovorans 743B
Yutaka Tamaru et al.
JOURNAL OF BACTERIOLOGY (2010)
Complete Genome Sequence of the Cellulolytic Thermophile Caldicellulosiruptor obsidiansis OB47T
James G. Elkins et al.
JOURNAL OF BACTERIOLOGY (2010)
Genome Sequence of the Solvent-Producing Bacterium Clostridium carboxidivorans Strain P7T
Debarati Paul et al.
JOURNAL OF BACTERIOLOGY (2010)
Transcription, processing and function of CRISPR cassettes in Escherichia coli
Ksenia Pougach et al.
MOLECULAR MICROBIOLOGY (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling et al.
PLOS ONE (2010)
Clostridium ljungdahlii represents a microbial production platform based on syngas
Michael Koepke et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
ABySS: A parallel assembler for short read sequence data
Jared T. Simpson et al.
GENOME RESEARCH (2009)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
Comparative analysis of CRISPR loci in lactic acid bacteria genomes
Philippe Horvath et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2009)
CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties
Reidun K. Lillestol et al.
MOLECULAR MICROBIOLOGY (2009)
Real-Time DNA Sequencing from Single Polymerase Molecules
John Eid et al.
SCIENCE (2009)
Genome Project Standards in a New Era of Sequencing
P. S. G. Chain et al.
SCIENCE (2009)
Genesis, effects and fates of repeats in prokaryotic genomes
Todd J. Treangen et al.
FEMS MICROBIOLOGY REVIEWS (2009)
Next-Generation DNA Sequencing Methods
Elaine R. Mardis
Annual Review of Genomics and Human Genetics (2008)
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
Jason Carte et al.
GENES & DEVELOPMENT (2008)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
CRISPR - a widespread system that provides acquired resistance against phages in bacteria and archaea
Rotem Sorek et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Small CRISPR RNAs guide antiviral defense in prokaryotes
Stan J. J. Brouns et al.
SCIENCE (2008)
PILER-CR: Fast and accurate identification of CRISPR repeats
Robert C. Edgar
BMC BIOINFORMATICS (2007)
Phage_Finder:: Automated identification and classification of prophage regions in complete bacterial genome sequences
Derrick E. Fouts
NUCLEIC ACIDS RESEARCH (2006)
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
Feng Chen et al.
NUCLEIC ACIDS RESEARCH (2006)
Versatile and open software for comparing large genomes
S Kurtz et al.
GENOME BIOLOGY (2004)
Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum
J Nölling et al.
JOURNAL OF BACTERIOLOGY (2001)
分享论文
