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Tristan T. Aumentado-Armstrong et al.
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Yih-Chii Hwang et al.
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Jun-Koo Park et al.
BULLETIN OF MATHEMATICAL BIOLOGY (2013)
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Roberto Mosca et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2013)
Interplay of physics and evolution in the likely origin of protein biochemical function
Jeffrey Skolnick et al.
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Martin H. Schaefer et al.
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Mu Gao et al.
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Prescont: Predicting protein-protein interfaces utilizing four residue properties
Hermann Zellner et al.
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Mark N. Wass et al.
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Mainak Guharoy et al.
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Structural space of protein-protein interfaces is degenerate, close to complete, and highly connected
Mu Gao et al.
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Protein interface conservation across structure space
Qiangfeng Cliff Zhang et al.
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FINDSITE: a combined evolution/structure-based approach to protein function prediction
Jeffrey Skolnick et al.
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An empirical framework for binary interactome mapping
Kavitha Venkatesan et al.
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The continuity of protein structure space is an intrinsic property of proteins
Jeffrey Skolnick et al.
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Building and assessing atomic models of proteins from structural templates: Learning and benchmarks
Brinda Kizhakke Vallat et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests
Mile Sikic et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
M-TASSER: An algorithm for protein quaternary structure prediction
Huiling Chen et al.
BIOPHYSICAL JOURNAL (2008)
Principles of protein-protein interactions: What are the preferred ways for proteins to interact?
Ozlem Keskin et al.
CHEMICAL REVIEWS (2008)
Probing the origin of tubulin rigidity with molecular simulations
Ruxandra I. Dima et al.
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Michael P. H. Stumpf et al.
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A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation
Michal Brylinski et al.
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Lei Yang et al.
BIOPHYSICAL JOURNAL (2007)
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John A. Capra et al.
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Predictina protein-protein interactions based only on sequences information
Juwen Shen et al.
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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
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On the origin and highly likely completeness of single-domain protein structures
Y Zhang et al.
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Hot regions in protein-protein interactions: The organization and contribution of structurally conserved hot spot residues
O Keskin et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
TM-align: a protein structure alignment algorithm based on the TM-score
Y Zhang et al.
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Automated structure prediction of weakly homologous proteins on a genomic scale'
Y Zhang et al.
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The PDB is a covering set of small protein structures
D Kihara et al.
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Diversity of protein-protein interactions
IMA Nooren et al.
EMBO JOURNAL (2003)
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J Janin et al.
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Development of unified statistical potentials describing protein-protein interactions
H Lu et al.
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HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
C Dominguez et al.
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Structural characterisation and functional significance of transient protein-protein interactions
IMA Nooren et al.
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MULTIPROSPECTOR: An algorithm for the prediction of protein-protein interactions by multimeric threading
L Lu et al.
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A simple physical model for binding energy hot spots in protein-protein complexes
T Kortemme et al.
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Interrogating protein interaction networks through structural biology
P Aloy et al.
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ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions
KS Thorn et al.
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The Protein Data Bank
HM Berman et al.
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