期刊
VIRUS EVOLUTION
卷 4, 期 1, 页码 -出版社
OXFORD UNIV PRESS
DOI: 10.1093/ve/vey016
关键词
phylogenetics; phylodynamics; Bayesian inference; Markov chain Monte Carlo
类别
资金
- European Union Seventh Framework Programme for research, technological development and demonstration [278433-PREDEMICS, 725422-ReservoirDOCS]
- European Union's Horizon 2020 research and innovation programme [634650]
- Wellcome Trust [206298/Z/17/Z]
- NSF [DMS 1264153, DBI 1661443]
- NIH [R01 HG006139, R01 AI107034, U19 AI135995]
- Special Research Fund, KU Leuven ('Bijzonder Onderzoeksfonds', KU Leuven) [OT/14/115]
- Research Foundation-Flanders ('Fonds voor Wetenschappelijk Onderzoek-Vlaanderen') [G066215N, G0D5117N, G0B9317N]
- Interne Fondsen KU Leuven/Internal Funds KU Leuven
- NVIDIA Corporation
- NATIONAL HUMAN GENOME RESEARCH INSTITUTE [R01HG006139] Funding Source: NIH RePORTER
- NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES [U19AI135995, R01AI107034] Funding Source: NIH RePORTER
- Direct For Biological Sciences [1356562] Funding Source: National Science Foundation
The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package has become a primary tool for Bayesian phylogenetic and phylodynamic inference from genetic sequence data. BEAST unifies molecular phylogenetic reconstruction with complex discrete and continuous trait evolution, divergence-time dating, and coalescent demographic models in an efficient statistical inference engine using Markov chain Monte Carlo integration. A convenient, cross-platform, graphical user interface allows the flexible construction of complex evolutionary analyses.
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