期刊
BIOPHYSICAL JOURNAL
卷 103, 期 8, 页码 1784-1789出版社
CELL PRESS
DOI: 10.1016/j.bpj.2012.08.058
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资金
- National Institutes of Health
- National Science Foundation [PHY-0822283]
- Howard Hughes Medical Institute
- National Biomedical Computation Resource
- National Science Foundation Supercomputer Centers
- American Heart Association
- Center for Theoretical Biological Physics
- Pittsburgh Supercomputing Center through National Institutes of Health [NIH RC2GM093307]
- Direct For Biological Sciences
- Div Of Molecular and Cellular Bioscience [1020765] Funding Source: National Science Foundation
- Division Of Physics
- Direct For Mathematical & Physical Scien [1308264] Funding Source: National Science Foundation
Troponin (Tn) is an important regulatory protein in the thin-filament complex of cardiomyocytes. Calcium binding to the troponin C (TnC) subunit causes a change in its dynamics that leads to the transient opening of a hydrophobic patch on TnC's surface, to which a helix of another subunit, troponin I (TnI), binds. This process initiates contraction, making it an important target for studies investigating the detailed molecular processes that underlie contraction. Here we use microsecond-time-scale Anton molecular dynamics simulations to investigate the dynamics and kinetics of the opening transition of the TnC hydrophobic patch. Free-energy differences for opening are calculated for wild-type Ca2+-bound TnC (similar to 8 kcal/mol), V44Q Ca2+-bound TnC (3.2 kcal/mol), E40A Ca2+-bound TnC (similar to 12 kcal/mol), and wild-type apo TnC (similar to 20 kcal/mol). These results suggest that the mutations have a profound impact on the frequency with which the hydrophobic patch presents to TnI. In addition, these simulations corroborate that cardiac wild-type TnC does not open on timescales relevant to contraction without calcium being bound.
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