期刊
BIOINFORMATICS
卷 34, 期 2, 页码 317-318出版社
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btx582
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资金
- Wellcome Trust [105614/Z/14/Z]
- Wellcome Trust core grant [104111/Z/14/Z]
- BBSRC [BB/L018616/1]
- MRC [MR/N005813/1] Funding Source: UKRI
- Biotechnology and Biological Sciences Research Council [BB/L018616/1] Funding Source: researchfish
- Medical Research Council [MR/N005813/1] Funding Source: researchfish
Motivation: We recently published MS2LDA, a method for the decomposition of sets of molecular fragment data derived from large metabolomics experiments. To make the method more widely available to the community, here we present ms2lda.org, a web application that allows users to upload their data, run MS2LDA analyses and explore the results through interactive visualizations. Results: Ms2lda.org takes tandem mass spectrometry data in many standard formats and allows the user to infer the sets of fragment and neutral loss features that co-occur together (Mass2Motifs). As an alternative workflow, the user can also decompose a data set onto predefined Mass2Motifs. This is accomplished through the web interface or programmatically from our web service.
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