相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Long-read transcriptome sequencing reveals abundant promoter diversity in distinct molecular subtypes of gastric cancer
Kie Kyon Huang et al.
GENOME BIOLOGY (2021)
The mutational constraint spectrum quantified from variation in 141,456 humans
Konrad J. Karczewski et al.
NATURE (2020)
Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease
Thomas A. Ray et al.
NATURE COMMUNICATIONS (2020)
Unveiling novel targets of paclitaxel resistance by single molecule long-read RNA sequencing in breast cancer
Bi Lian et al.
SCIENTIFIC REPORTS (2019)
Prognostic role of ARID1A negative expression in gastric cancer
Mai Ashizawa et al.
SCIENTIFIC REPORTS (2019)
A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters
Deniz Demircioglu et al.
CELL (2019)
Evaluation and application of RNA-Seq by MinION
Masahide Seki et al.
DNA RESEARCH (2019)
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Yasset Perez-Riverol et al.
NUCLEIC ACIDS RESEARCH (2019)
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments
Jeanne Cheneby et al.
NUCLEIC ACIDS RESEARCH (2018)
An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics
Jianfang Liu et al.
CELL (2018)
SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
Manuel Tardaguila et al.
GENOME RESEARCH (2018)
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
Maria Nattestad et al.
GENOME RESEARCH (2018)
Loss of ARID1A expression is associated with poor prognosis in patients with gastric cancer
Yi Ping Zhu et al.
HUMAN PATHOLOGY (2018)
Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries
Freddie Bray et al.
CA-A CANCER JOURNAL FOR CLINICIANS (2018)
Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients
Andre Kahles et al.
CANCER CELL (2018)
SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions
Juan L. Trincado et al.
GENOME BIOLOGY (2018)
NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data
Vanessa Jurtz et al.
JOURNAL OF IMMUNOLOGY (2017)
Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells
Ashley Byrne et al.
NATURE COMMUNICATIONS (2017)
Epigenomic Promoter Alterations Amplify Gene Isoform and Immunogenic Diversity in Gastric Adenocarcinoma
Aditi Qamra et al.
CANCER DISCOVERY (2017)
Light Controls Protein Localization through Phytochrome-Mediated Alternative Promoter Selection
Tomokazu Ushijima et al.
CELL (2017)
Near-optimal probabilistic RNA-seq quantification
Nicolas L. Bray et al.
NATURE BIOTECHNOLOGY (2016)
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
Stefka Tyanova et al.
NATURE PROTOCOLS (2016)
Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma
W. Marston Linehan et al.
NEW ENGLAND JOURNAL OF MEDICINE (2016)
Identification of protein coding regions in RNA transcripts
Shiyuyun Tang et al.
NUCLEIC ACIDS RESEARCH (2015)
Activation of MET via Diverse Exon 14 Splicing Alterations Occurs in Multiple Tumor Types and Confers Clinical Sensitivity to MET Inhibitors
Garrett M. Frampton et al.
CANCER DISCOVERY (2015)
genomation: a toolkit to summarize, annotate and visualize genomic intervals
Altuna Akalin et al.
BIOINFORMATICS (2015)
MSIsensor: microsatellite instability detection using paired tumor-normal sequence data
Beifang Niu et al.
BIOINFORMATICS (2014)
Comprehensive molecular characterization of gastric adenocarcinoma
Adam J. Bass et al.
NATURE (2014)
High-Resolution Transcriptome Analysis with Long-Read RNA Sequencing
Hyunghoon Cho et al.
PLOS ONE (2014)
Defining a personal, allele-specific, and single-molecule long-read transcriptome
Hagen Tilgner et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
In utero undernourishment perturbs the adult sperm methylome and intergenerational metabolism
Elizabeth J. Radford et al.
SCIENCE (2014)
Nanoscale chromatin profiling of gastric adenocarcinoma reveals cancer-associated cryptic promoters and somatically acquired regulatory elements
Masafumi Muratani et al.
NATURE COMMUNICATIONS (2014)
Integrated exome and transcriptome sequencing reveals ZAK isoform usage in gastric cancer
Jinfeng Liu et al.
NATURE COMMUNICATIONS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
Kristian Cibulskis et al.
NATURE BIOTECHNOLOGY (2013)
Characterization of the human ESC transcriptome by hybrid sequencing
Kin Fai Au et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
AMPKα Modulation in Cancer Progression: Multilayer Integrative Analysis of the Whole Transcriptome in Asian Gastric Cancer
Yon Hui Kim et al.
CANCER RESEARCH (2012)
Absolute quantification of somatic DNA alterations in human cancer
Scott L. Carter et al.
NATURE BIOTECHNOLOGY (2012)
Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes
Zhi Jiang Zang et al.
NATURE GENETICS (2012)
RAF inhibitor resistance is mediated by dimerization of aberrantly spliced BRAF(V600E)
Poulikos I. Poulikakos et al.
NATURE (2011)
Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma
Nallasivam Palanisamy et al.
NATURE MEDICINE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
TD Wu et al.
BIOINFORMATICS (2005)
Pituitary tumor-derived fibroblast growth factor receptor 4 isoform disrupts neural cell-adhesion molecule/N-cadherin signaling to diminish cell adhesiveness: A mechanism underlying pituitary neoplasia
S Ezzat et al.
MOLECULAR ENDOCRINOLOGY (2004)
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
T Shiraki et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Complex controls: the role of alternative promoters in mammalian genomes
JR Landry et al.
TRENDS IN GENETICS (2003)
Blockade of Fas-dependent apoptosis by soluble Fas in LGL leukemia
JH Liu et al.
BLOOD (2002)
Overexpression of the hepatocyte growth factor (HGF) receptor (Met) and presence of a truncated and activated intracellular HGF receptor fragment in locally aggressive/malignant human musculoskeletal tumors
V Wallenius et al.
AMERICAN JOURNAL OF PATHOLOGY (2000)
分享论文
