相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Strong succession in arbuscular mycorrhizal fungal communities
Cheng Gao et al.
ISME JOURNAL (2019)
Soil bacterial community structure in Chinese wetlands
Jiaxing An et al.
GEODERMA (2019)
Rapid Inference of Direct Interactions in Large-Scale Ecological Networks from Heterogeneous Microbial Sequencing Data
Janko Tackmann et al.
CELL SYSTEMS (2019)
From hairballs to hypotheses-biological insights from microbial networks
Lisa Rottjers et al.
FEMS MICROBIOLOGY REVIEWS (2018)
Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons
Ilias Lagkouvardos et al.
PEERJ (2017)
Long-term nitrogen addition affects the phylogenetic turnover of soil microbial community responding to moisture pulse
Chi Liu et al.
SCIENTIFIC REPORTS (2017)
The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages
Shengjing Shi et al.
ECOLOGY LETTERS (2016)
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
Nhu H. Nguyen et al.
FUNGAL ECOLOGY (2016)
Decoupling function and taxonomy in the global ocean microbiome
Stilianos Louca et al.
SCIENCE (2016)
Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data
Kathrin P. Asshauer et al.
BIOINFORMATICS (2015)
Early life dynamics of the human gut virome and bacterial microbiome in infants
Efrem S. Lim et al.
NATURE MEDICINE (2015)
Sparse and Compositionally Robust Inference of Microbial Ecological Networks
Zachary D. Kurtz et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Quantifying community assembly processes and identifying features that impose them
James C. Stegen et al.
ISME JOURNAL (2013)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
Abiotic Factors Shape Microbial Diversity in Sonoran Desert Soils
David R. Andrew et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Molecular ecological network analyses
Ye Deng et al.
BMC BIOINFORMATICS (2012)
Inferring Correlation Networks from Genomic Survey Data
Jonathan Friedman et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria
Rodrigo Mendes et al.
SCIENCE (2011)
Metagenomic biomarker discovery and explanation
Nicola Segata et al.
GENOME BIOLOGY (2011)
Picante: R tools for integrating phylogenies and ecology
Steven W. Kembel et al.
BIOINFORMATICS (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples
James Robert White et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder et al.
BMC BIOINFORMATICS (2008)
UniFrac: a new phylogenetic method for comparing microbial communities
C Lozupone et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)