相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。The road to fully programmable protein catalysis
Sarah L. Lovelock et al.
NATURE (2022)
Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein-Ligand Docking
Hahnbeom Park et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2021)
Incorporation of sensing modalities into de novo designed fluorescence-activating proteins
Jason C. Klima et al.
NATURE COMMUNICATIONS (2021)
Protein Flexibility and Stiffness Enable Efficient Enzymatic Catalysis
John P. Richard
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2019)
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
Dorothee Liebschner et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2019)
De novo design of a fluorescence-activating β-barrel
Jiayi Dou et al.
NATURE (2018)
Emergence of a catalytic tetrad during evolution of a highly active artificial aldolase
Richard Obexer et al.
NATURE CHEMISTRY (2017)
The TIM Barrel Architecture Facilitated the Early Evolution of Protein-Mediated Metabolism
Aaron David Goldman et al.
JOURNAL OF MOLECULAR EVOLUTION (2016)
The Catalytic Mechanism of a Natural Diels-Alderase Revealed in Molecular Detail
Matthew J. Byrne et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2016)
De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity
Scott E. Boyken et al.
SCIENCE (2016)
Active Site Plasticity of a Computationally Designed RetroAldolase Enzyme
Richard Obexer et al.
CHEMCATCHEM (2014)
The robustness and innovability of protein folds
Agnes Toth-Petroczy et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2014)
Exploration of Alternate Catalytic Mechanisms and Optimization Strategies for Retroaldolase Design
Sinisa Bjelic et al.
JOURNAL OF MOLECULAR BIOLOGY (2014)
High thermodynamic stability of parametrically designed helical bundles
Po-Ssu Huang et al.
SCIENCE (2014)
Engineering of Flexible Loops in Enzymes
Bettina M. Nestl et al.
ACS CATALYSIS (2014)
What Makes a Protein Fold Amenable to Functional Innovation? Fold Polarity and Stability Trade-offs
Eynat Dellus-Gur et al.
JOURNAL OF MOLECULAR BIOLOGY (2013)
Evolution of a designed retro-aldolase leads to complete active site remodeling
Lars Giger et al.
NATURE CHEMICAL BIOLOGY (2013)
High-Resolution Comparative Modeling with RosettaCM
Yifan Song et al.
STRUCTURE (2013)
Reducing Codon Redundancy and Screening Effort of Combinatorial Protein Libraries Created by Saturation Mutagenesis
Sabrina Kille et al.
ACS SYNTHETIC BIOLOGY (2013)
Principles for designing ideal protein structures
Nobuyasu Koga et al.
NATURE (2012)
Crystal Structures of Physcomitrella patens AOC1 and AOC2: Insights into the Enzyme Mechanism and Differences in Substrate Specificity
Piotr Neumann et al.
PLANT PHYSIOLOGY (2012)
Incorporation of Noncanonical Amino Acids into Rosetta and Use in Computational Protein-Peptide Interface Design
P. Douglas Renfrew et al.
PLOS ONE (2012)
Robust design and optimization of retroaldol enzymes
Eric A. Althoff et al.
PROTEIN SCIENCE (2012)
RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design
Po-Ssu Huang et al.
PLOS ONE (2011)
Large shifts in pKa values of lysine residues buried inside a protein
Daniel G. Isom et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
A Rationally Designed Aldolase Foldamer
Manuel M. Mueller et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)
Stability effects of mutations and protein evolvability
Nobuhiko Tokuriki et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)
De novo computational design of retro-aldol enzymes
Lin Jiang et al.
SCIENCE (2008)
How Protein Stability and New Functions Trade Off
Nobuhiko Tokuriki et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Asymmetric enamine catalysis
Santanu Mukherjee et al.
CHEMICAL REVIEWS (2007)
Phaser crystallographic software
Airlie J. McCoy et al.
JOURNAL OF APPLIED CRYSTALLOGRAPHY (2007)
The stability effects of protein mutations appear to be universally distributed
Nobuhiko Tokuriki et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
New algorithms and an in silico benchmark for computational enzyme design
Alexandre Zanghellini et al.
PROTEIN SCIENCE (2006)
Automatic atom type and bond type perception in molecular mechanical calculations
Junmei Wang et al.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2006)
Development of small designer aldolase enzymes: Catalytic activity, folding, and substrate specificity
F Tanaka et al.
BIOCHEMISTRY (2005)
Coot:: model-building tools for molecular graphics
P Emsley et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)
Design of a novel globular protein fold with atomic-level accuracy
B Kuhlman et al.
SCIENCE (2003)
Conserved signature proposed for folding in the lipocalin superfamily
LH Greene et al.
FEBS LETTERS (2003)
One fold with many functions: The evolutionary relationships between TIM barrel families based on their sequences, structures and functions
N Nagano et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Why are proteins marginally stable?
DM Taverna et al.
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2002)
Transition states of amine-catalyzed aldol reactions involving enamine intermediates: Theoretical studies of mechanism, reactivity, and stereoselectivity
S Bahmanyar et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2001)
分享论文
