期刊
BIOMETRICS
卷 66, 期 2, 页码 463-473出版社
WILEY
DOI: 10.1111/j.1541-0420.2009.01283.x
关键词
Bayesian hierarchical model; Evolutionary Monte Carlo; Functional data classification; Functional predictor selection; Fluorescence spectroscopy
资金
- NCI [PO1-CA82710]
- NSF [DMS0505584, DMS0605001]
- NIH [R01-HG00331901]
- NATIONAL CANCER INSTITUTE [P01CA082710, T32CA096520] Funding Source: NIH RePORTER
- NATIONAL HUMAN GENOME RESEARCH INSTITUTE [R01HG003319] Funding Source: NIH RePORTER
In functional data classification: functional observations are often contaminated by various systematic effects, such as random batch effects caused by device artifacts, or fixed effects caused by sample-related factors. These effects may lead to classification bias and thus should not be neglected. Another issue of concern is the selection of functions when predictors consist of multiple functions, smile of which may be redundant. The above issues arise in a real data application where we use fluorescence spectroscopy to detect cervical precancer. In this article, we propose a Bayesian hierarchical model that takes into account random batch effects and selects effective functions among multiple functional predictors. Fixed effects or predictors in nonfunctional form are also included in the model. The dimension of the functional data is reduced through orthonormal basis expansion or functional principal components. For posterior sampling, we use a hybrid Metropolis Hastings/Gibbs sampler. which suffers slow mixing. An evolutionary Monte Carlo algorithm is applied to improve the mixing. Simulation and real data application show that the proposed model provides accurate selection of functional predictors as well as good classification.
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