期刊
NUCLEIC ACIDS RESEARCH
卷 28, 期 2, 页码 655-661出版社
OXFORD UNIV PRESS
DOI: 10.1093/nar/28.2.655
关键词
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DNA probes with conjugated minor groove binder (MGB) groups form extremely stable duplexes with single-stranded DNA targets, allowing shorter probes to be used for hybridization based assays. In this paper, sequence specificity of 3'-MGB probes was explored. In comparison with unmodified DNA, MGB probes had higher melting temperature (T-m) and increased specificity, especially when a mismatch was in the MGB region of the duplex. To exploit these properties, fluorogenic MGB probes were prepared and investigated in the 5'-nuclease PCR assay (realtime PCR assay, TaqMan assay). A 12mer MGB probe had the same T-m (65 degrees C) as a no-MGB 27mer probe. The fluorogenic MGB probes were more specific for single base mismatches and fluorescence quenching was more efficient, giving increased sensitivity. ATT rich duplexes were stabilized more than G/C rich duplexes, thereby leveling probe T-m and simplifying design. In summary, MGB probes were more sequence specific than standard DNA probes, especially for single base mismatches at elevated hybridization temperatures.
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