期刊
BIOINFORMATICS
卷 16, 期 2, 页码 135-139出版社
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/16.2.135
关键词
-
Motivation: Typesetting, shading and labeling of nucleotide and peptide alignments using standard word processing or graphics software is time consuming. Available automatic sequence shading programs usually do not allow manual application of additional shadings or labels. Hence, a flexible alignment shading package was designed for both calculated and manual shading using the macro language of the scientific typesetting software LAT(E)X2(epsilon). Results: T(E)Xshade is the first TEX-based alignment shading software featuring, in addition to standard identity and similarity shading, special modes for the display of functional aspects such as charge, hydropathy or solvent accessibility. A plenitude of commands for manual shading, graphical labels, re-arrangements of the sequence order numbering, legends etc. is implemented. Further T(E)Xshade allows the inclusion and display of secondary structure predictions in the DSSP-, STRIDE- and PHD-format. Availability: From http://homepages.uni-tuebingen.de/beitz/tse.html (macro package and on-fine documentation) Contact: eric.beitz@uni-tuebingen.de.
作者
我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。
推荐
暂无数据